Publications

1

High-Purity Monovalent Functionalization of Carbon Nanotubes

S. Nishitani, Z. Liang, A. Tabo, W. Zhang, D. Smith, K. Xu, M. P. Landry, Angewandte Chemie International Edition, (2026).

10.1002/anie.7643898

2

Cryo-EM structures reveal a conserved architecture for raiA noncoding RNA

Y. He, J. Zhong, Y. Yang, R. Gunsalus, Z. Zhou, J. Feigon, Nucleic Acids Research, 54, gkag185, (2026).

10.1093/nar/gkag185

3

Ultrafast nano-imaging and nano-spectroscopy

B. L. Esses, D. Sandner, P. A. McKee, R. Wilcken, J. Nishida, R. L. Puro, M. B. Raschke, Nature Reviews Methods Primers, 6, 21, (2026).

10.1038/s43586-026-00474-7

4

Restoration of weak localization in bilayer graphene by a molecular thin film

A. Mansour, D. Diaz, M. Dissanayake Mudiyanselage, E. Henkhaus, J. Cho, V. Tran, F. Ramirez, E. Corona-Oceguera, J. Luna, K. Kodama, Y. Chen, H. Chan, J. Weber, B. Koford, P. Barfield, M. Martinez, K. Watanabe, T. Taniguchi, B. Regan, M. Mecklenburg, S. Grefe, T. Gredig, C. Ojeda-Aristizabal, 2D Materials, 13, 021001, (2026).

10.1088/2053-1583/ae4367

5

Multimodal Nanoscale Mapping of Local Structure and CO2 Adsorption in Metal–Organic Frameworks

S. L. Karstens, M. N. Dods, A. Saha, M. Garai, W. Dai, K. I. Graf, R. A. Klein, H. H. Jiang, J. Cho, K. C. Bustillo, M. B. Raschke, P. Ercius, J. R. Long, A. M. Minor, Journal of the American Chemical Society, 148, 8474-8486, (2026).

10.1021/jacs.5c19737

6

Optimizing experimental design for fast and accurate CD metrology of interconnects using coherent extreme-ultraviolet scatterometry

C. Klein, N. W. Jenkins, Y. Shao, Y. Li, J. Shin, S. Park, W. Kim, H. C. Kapteyn, M. M. Murnane, Journal of Micro/Nanopatterning, Materials, and Metrology, 25, 014001-1, (2026).

10.1117/1.jmm.25.1.014001

7

Structural and Compositional Evolution of Colloidal In1–xGaxP1–yAsy Nanocrystals during Cation Exchange Revealed by Electron Microscopy

B. F. Hammel, Z. Zhou, J. C. Ondry, D. V. Talapin, S. Yazdi, G. Dukovic, ACS Nano, 5c15614, (2026).

10.1021/acsnano.5c15614

8

Accurate determination of the 3D atomic structure of amorphous materials

Y. Liao, H. Sha, C. M. O’Leary, H. Zhong, Y. Yang, J. Miao, Nature, 649, 1123-1129, (2026).

10.1038/s41586-025-09857-4

9

Direct Observation of Nanoscale Polarization Switching in HZO Ferroelectrics Using STEM-EBIC

P. Venkatesan, Y. Chen, T. P. O’Neill, H. Chan, H. Jayasankar, P. Ravikumar, Z. Wang, S. S. Fields, M. K. Lenox, W. A. Hubbard, A. Padovani, L. Larcher, G. Thareja, S. Yu, J. F. Ihlefeld, W. Kim, D. Ha, B. C. Regan, A. Khan, 2025 IEEE International Electron Devices Meeting (IEDM), 1-4, (2025).

10.1109/iedm50572.2025.11353770

10

Direct measurement of the electron wind force in cobalt nanowires

B. Zutter, M. Mecklenburg, Y. Chen, H. Chan, J. J. Lodico, B. C. Regan, Applied Physics Letters, 127, 231901, (2025).

10.1063/5.0304171

11

Implementing Bayesian optimization to compare injection regimes and pulse propagation in two stage LWFA

C. Gardner, F. Dollar, New Journal of Physics, 27, 124301, (2025).

10.1088/1367-2630/ae23f1

12

Spectral DefocusCam: Super-Resolved Hyperspectral Imaging Through Defocus

C. Foley, E. Markley, K. Yanny, L. Waller, K. Monakhova, 2025 IEEE International Conference on Computational Photography (ICCP), 1-12, (2025).

10.1109/iccp64821.2025.11143845

13

Phase matching in Vector-Beam Driven High Harmonic Generation in 3D-printed Gas Cells

D. D. Attiyah, H. H. Allison, J. J. To, P. G. Kazansky, D. D. Schmidt, C. C. Gardner, V. V. Flores, J. J. Lewis, C. G. Durfee, F. F. Dollar, Journal of the Optical Society of America B, 42, 2747, (2025).

10.1364/josab.572118

14

Structural basis for L-isoaspartyl-containing protein recognition by the human PCMTD1 cullin-RING E3 ubiquitin ligase

E. Z. Pang, B. Zhao, C. Flowers, E. Oroudjeva, J. B. Winter, V. Pandey, M. R. Sawaya, J. Wohlschlegel, J. A. Loo, J. A. Rodriguez, S. G. Clarke, Journal of Biological Chemistry, 301, 110735, (2025).

10.1016/j.jbc.2025.110735

15

Cooling-Rate-Driven Polymorphism and Vacancy Ordering in Ce2MnGe6 Intergrowth Phases

M. E. Raines, G. T. McCandless, B. C. Schundelmier, S. Cetin, T. G. Spencer, M. C. Scott, K. Wei, J. Y. Chan, Crystal Growth & Design, 25, 9405-9415, (2025).

10.1021/acs.cgd.5c01182

16

Gradient-Adjusted Underdamped Langevin Dynamics for Sampling\ast

X. Zuo, S. Osher, W. Li, SIAM/ASA Journal on Uncertainty Quantification, 13, 1735-1765, (2025).

10.1137/24m1702015

17

Measuring Chemical Shifts with Energy-Dispersive X-Ray Spectroscopy

Y. Chen, R. Jin, Y. Heffes, B. Zutter, T. P. O’Neill, J. J. Lodico, B. C. Regan, M. Mecklenburg, Physical Review Letters, 135, 157002, (2025).

10.1103/t1rs-7kr2

18

Multi-element tomography: leveraging absorption and phase contrast in soft x-ray ptychography

J. Plumb, A. Ditter, D. Kim, K. Lee, Y. Yu, D. Shapiro, X-Ray Nanoimaging: Instruments and Methods VII, 13622, 4, (2025).

10.1117/12.3063920

19

Leveraging structure-informed machine learning for fast steric zipper propensity prediction across whole proteomes

S. Zink, S. Qu, T. Holton, E. Shankar, P. Stanley, D. S. Eisenberg, M. R. Sawaya, J. A. Rodriguez, PLOS Computational Biology, 21, e1013395, (2025).

10.1371/journal.pcbi.1013395

20

Focusing of relativistic electron beams with permanent magnetic solenoid

T. T. Xu, C. R. Duncan, P. P. Denham, B. H. Schaap, A. A. Kulkarni, D. D. Garcia, S. D. Anderson, P. P. Musumeci, R. J. England, Physical Review Accelerators and Beams, 28, 082401, (2025).

10.1103/phhz-fgnl

21

Point Defect Induced Potential Wells across the m-Plane of Core/Shell GaN Nanowires

S. Rezaie, G. Kusch, L. Samuelson, J. B. Wagner, S. Yazdi, physica status solidi (RRL) – Rapid Research Letters, 2500145, (2025).

10.1002/pssr.202500145

22

Structural insights into functional regulation of the human CPEB3 prion by an amyloid-forming segment

M. D. Flores, M. R. Sawaya, D. R. Boyer, S. Zink, S. Tovmasyan, A. Saucedo, L. S. Richards, C. Zee, J. Cardenas, L. Fioriti, J. A. Rodriguez, Structure, 33, 1314-1324.e5, (2025).

10.1016/j.str.2025.05.007

23

Combining MicroED and native mass spectrometry for structural discovery of enzyme-small molecule complexes

N. W. Vlahakis, C. W. Flowers, M. Liu, M. P. Agdanowski, S. Johnson, J. A. Summers, L. C. Jacobs, C. Keyser, P. Russell, S. L. Rose, J. Orlans, N. Adhami, Y. Chen, M. R. Sawaya, S. Basu, D. de Sanctis, Y. Chen, S. Wakatsuki, H. M. Nelson, J. A. Loo, Y. Tang, J. A. Rodriguez, Proceedings of the National Academy of Sciences, 122, e2503780122, (2025).

10.1073/pnas.2503780122

24

The Effect of Electrode Structure on Ferroelectric Domains in Hf0.5Zr0.5O2

T. O'Neill, Y. Chen, H. Chan, M. Lenox, W. Hubbard, J. Ihlefeld, B. Regan, Microscopy & Microanalysis, 31, ozaf048.567, (2025).

10.1093/mam/ozaf048.567

25

Structure of a new capsid form and comparison with A-, B-, and C-capsids clarify herpesvirus assembly

A. Stevens, S. Kashyap, E. Crofut, A. Alvarez-Cabrera, J. Jih, Y. Liu, Z. ng Zhou, Journal of Virology, 99, 7, (2025).

10.1128/jvi.00504-25

26

A Gaussian Parameterization for Direct Atomic Structure Identification in Electron Tomography

N. M. Singh, T. Chien, A. C. McCray, C. Ophus, L. Waller, 2025 IEEE International Conference on Computational Photography (ICCP), 1-10, (2025).

10.1109/iccp64821.2025.11143828

27

Curvature Generation and Engineering Principles from Shewanella oneidensis Multi-flagellin Flagellum

Q. Lou, H. Fan, Y. Liu, J. F. Miller, Y. Huang, Z. ng Zhou, ACS Nano, 19, 25682-25696, (2025).

10.1021/acsnano.5c02744

28

Chemical Shifts Observed Using Energy Dispersive Spectroscopy

M. Mecklenburg, R. Jin, Y. Heffes, B. Zutter, T. O’Neill, J. Lodico, B. Regan, Y. Chen, Microscopy and Microanalysis, 31, ozaf048.825, (2025).

10.1093/mam/ozaf048.825

29

In situ insights into antibody-mediated neutralization of a pre-fusion Junin virus glycoprotein complex

L. J. Taylor, M. R. Sawaya, J. B. Westover, C. Wang, F. Jimenez, A. J. Muñoz, J. Whitelegge, B. B. Gowen, G. F. Helguera, R. Castells-Graells, J. A. Rodriguez, Cell Reports, 44, 115971, (2025).

10.1016/j.celrep.2025.115971

30

Crystal Nucleation and Growth in High-Entropy Alloys Revealed by Atomic Electron Tomography

J. Miao, Y. Yuan, S. Moniri, Y. Yang, J. Zhou, A. Yuan, D. Kim, Y. Yang, C. Li, W. Chen, P. Ercius, Microscopy and Microanalysis, 31, ozaf048.792, (2025).

10.1093/mam/ozaf048.792

31

Annealing Optimization for HZO Thin Films with In-Situ STEM EBIC Characterization

Y. Chen, H. Chan, T. O’Neill, M. Lenox, W. Hubbard, J. Ihlefeld, B. Regan, Microscopy and Microanalysis, 31, ozaf048.574, (2025).

10.1093/mam/ozaf048.574

32

Secondary electron emission current mapping for nanoscale thermometry

W. Hubbard, M. Mecklenburg, H. Chan, B. Regan, Nanotechnology, 36, 265704, (2025).

10.1088/1361-6528/ade445

33

Fabrication of a novel porous silicon biomembrane for applications in organ-on-chip technology

M. C. Williams, C. Wiens, S. Genc, S. Thompson, L. Gislason, D. Blake, J. Jessing, Biomedical Microdevices, 27, 32, (2025).

10.1007/s10544-025-00760-3

34

Sample motion for structured illumination fluorescence microscopy

R. Cao, G. Meng, L. Waller, Optics Letters, 50, 4074, (2025).

10.1364/ol.560873

35

Nanoscale confinement of phonon flow and heat transport

A. Beardo, W. Chen, B. McBennett, T. Karimzadeh Sabet, E. E. Nelson, T. H. Culman, H. C. Kapteyn, J. L. Knobloch, M. M. Murnane, I. Dabo, npj Computational Materials, 11, 172, (2025).

10.1038/s41524-025-01593-7

36

Structure, identification, and characterization of the RibD-enolase complex in Francisella

X. Liu, D. Clemens, B. Lee, R. Aguirre, M. Horwitz, Z. Zhou, Protein & Cell, pwaf045, 1-6, (2025).

10.1093/procel/pwaf045

37

Demonstration and structural basis of a therapeutic DNA aptamer for SARS-CoV-2 spike protein detection

Y. Liu, K. Wang, W. Wang, S. Kashyap, J. Jih, A. Imani, T. Hsiai, Z. ng Zhou, Biosensors and Bioelectronics, 287, 117691, (2025).

10.1016/j.bios.2025.117691

38

Scattering-based super-resolution optical fluctuation imaging

S. Yudovich, G. Posnjak, L. Shani, E. Teblum, T. Liedl, J. Enderlein, S. Weiss, Optics Express, 33, 18824, (2025).

10.1364/oe.541324

39

Infectivity and structure of SARS-CoV-2 after hydrogen peroxide treatment

S. R. Aliyari, G. Xie, X. Xia, L. Wang, Z. ng Zhou, G. Cheng, mBio, 16, e03994-24, (2025).

10.1128/mbio.03994-24

40

Fast partial Fourier transforms for large-scale ptychography

R. Parada, S. Wu Fung, S. Osher, Inverse Problems and Imaging, 0-0, (2025).

10.3934/ipi.2025019

41

Ring deconvolution microscopy: exploiting symmetry for efficient spatially varying aberration correction

A. Kohli, A. N. Angelopoulos, D. McAllister, E. Whang, S. You, K. Yanny, F. M. Gasparoli, B. Chang, R. Fiolka, L. Waller, Nature Methods, (2025).

10.1038/s41592-025-02684-5

42

Structures of Native Doublet Microtubules from Trichomonas vaginalis Reveal Parasite-Specific Proteins

A. Stevens, S. Kashyap, E. H. Crofut, S. E. Wang, K. A. Muratore, P. J. Johnson, Z. ng Zhou, Nature Communications, 16, 3996, (2025).

10.1038/s41467-025-59369-y

43

Optimized EUV Scatterometry Measurements with Tunable High Harmonic Generation and the Fisher Information Matrix

C. Klein, N. W. Jenkins, Y. Shao, Y. Li, S. Park, W. Kim, H. C. Kapteyn, M. M. Murnane, Metrology, Inspection, and Process Control XXXIX, 1342607, 5, (2025).

10.1117/12.3051113

44

Lab-based multi-wavelength EUV diffractometry for critical dimensions

B. M. Barnes, A. Chew, N. W. Jenkins, Y. Shao, M. Y. Sohn, R. ph Kline, D. F. Sunday, P. P. Balakrishnan, T. A. Germer, S. Grantham, C. Klein, S. L. Moffitt, E. L. Shirley, H. C. Kapteyn, M. M. Murnane, Metrology, Inspection, and Process Control XXXIX, 134261V, 63, (2025).

10.1117/12.3050342

45

Enhanced EUV mask imaging using Fourier ptychographic microscopy

C. Gu, A. Islegen-Wojdyla, M. P. Benk, K. A. Goldberg, L. Waller, Optical and EUV Nanolithography XXXVIII, 13424, 40, (2025).

10.1117/12.3051223

46

Interferometric scattering microscopy

N. S. Ginsberg, C. Hsieh, P. Kukura, M. Piliarik, V. Sandoghdar, Nature Reviews Methods Primers, 5, 23, (2025).

10.1038/s43586-025-00391-1

47

Self-Assembled Magnetic Nanoparticle Layers: Structural Control for Reconfigurable Magnetism and Functional Applications

X. Lu, J. Zou, M. Pham, A. Rana, C. Liao, E. Cating Subramanian, X. Wu, Y. Lo, C. S. Bevis, R. M. Karl, S. Lepadatu, Y. Yu, Y. Tserkovnyak, T. P. Russell, D. A. Shapiro, H. Kapteyn, M. Murnane, R. Streubel, J. Miao, ACS Applied Nano Materials, 8, 6643-6650, (2025).

10.1021/acsanm.5c00461

48

Trypanosome doublet microtubule structures reveal flagellum assembly and motility mechanisms

X. Xia, M. M. Shimogawa, H. Wang, S. Liu, A. Wijono, G. Langousis, A. M. Kassem, J. A. Wohlschlegel, K. L. Hill, Z. ng Zhou, Science, 387, 1162, (2025).

10.1126/science.adr3314

49

Accounting for electron-beam-induced warping of molecular nanocrystals in MicroED structure determination

N. Vlahakis, A. Clauss, J. A. Rodriguez, IUCrJ, 12, 223-238, (2025).

10.1107/s2052252524012132

50

A Liquid-Core Fiber Platform for Classical and Entangled Two-Photon Absorption Measurements

K. M. Parzuchowski, M. D. Mazurek, C. H. Camp, M. J. Stevens, R. Jimenez, ACS Photonics, 4C02076, (2025).

10.1021/acsphotonics.4c02076

STROBE Publications

2026