Publications

1

Spatiotemporal shaping of broadband helical light pulses at relativistic intensities

A. Longman, D. Attiyah, E. S. Grace, C. Gardner, T. Suratwala, G. Tham, C. Harthcock, R. Fedosejevs, F. Dollar, Nature Photonics, 20, 843-849, (2026).

10.1038/s41566-026-01948-6

2

Brightness optimization in a 200 keV DTEM source by geometry-driven aberration suppression

P. Denham, P. Musumeci, D. J. Masiel, B. W. Reed, Ultramicroscopy, 285, 114408, (2026).

10.1016/j.ultramic.2026.114408

3

Electronic origin of reorganization energy in interfacial electron transfer

S. Maroo, L. Coello Escalante, Y. Wang, M. P. Erodici, J. N. Nessralla, A. Tabo, T. Taniguchi, K. Watanabe, K. Xu, D. T. Limmer, D. na Bediako, Nature, 653, 98-103, (2026).

10.1038/s41586-026-10311-2

4

High-Purity Monovalent Functionalization of Carbon Nanotubes

S. Nishitani, Z. Liang, A. Tabo, W. Zhang, D. Smith, K. Xu, M. P. Landry, Angewandte Chemie International Edition, (2026).

10.1002/anie.7643898

5

Adaptive design of EUV scatterometry through efficient Bayesian inference

Y. Shao, N. W. Jenkins, C. Klein, M. M. Murnane, H. C. Kapteyn, Metrology, Inspection, and Process Control XL, 13981, 220, (2026).

10.1117/12.3100655

6

Cryo-EM structures reveal a conserved architecture for raiA noncoding RNA

Y. He, J. Zhong, Y. Yang, R. Gunsalus, Z. Zhou, J. Feigon, Nucleic Acids Research, 54, gkag185, (2026).

10.1093/nar/gkag185

7

Ultrafast nano-imaging and nano-spectroscopy

B. L. Esses, D. Sandner, P. A. McKee, R. Wilcken, J. Nishida, R. L. Puro, M. B. Raschke, Nature Reviews Methods Primers, 6, 21, (2026).

10.1038/s43586-026-00474-7

8

Information-optimal phase mask design for lensless imaging

L. A. Kabuli, E. Markley, L. Waller, Computational Optical Imaging and Artificial Intelligence in Biomedical Sciences III, 13865, 22, (2026).

10.1117/12.3077933

9

Restoration of weak localization in bilayer graphene by a molecular thin film

A. Mansour, D. Diaz, M. Dissanayake Mudiyanselage, E. Henkhaus, J. Cho, V. Tran, F. Ramirez, E. Corona-Oceguera, J. Luna, K. Kodama, Y. Chen, H. Chan, J. Weber, B. Koford, P. Barfield, M. Martinez, K. Watanabe, T. Taniguchi, B. Regan, M. Mecklenburg, S. Grefe, T. Gredig, C. Ojeda-Aristizabal, 2D Materials, 13, 021001, (2026).

10.1088/2053-1583/ae4367

10

Multimodal Nanoscale Mapping of Local Structure and CO2 Adsorption in Metal–Organic Frameworks

S. L. Karstens, M. N. Dods, A. Saha, M. Garai, W. Dai, K. I. Graf, R. A. Klein, H. H. Jiang, J. Cho, K. C. Bustillo, M. B. Raschke, P. Ercius, J. R. Long, A. M. Minor, Journal of the American Chemical Society, 148, 8474-8486, (2026).

10.1021/jacs.5c19737

11

Optimizing experimental design for fast and accurate CD metrology of interconnects using coherent extreme-ultraviolet scatterometry

C. Klein, N. W. Jenkins, Y. Shao, Y. Li, J. Shin, S. Park, W. Kim, H. C. Kapteyn, M. M. Murnane, Journal of Micro/Nanopatterning, Materials, and Metrology, 25, 014001-1, (2026).

10.1117/1.jmm.25.1.014001

12

Structural and Compositional Evolution of Colloidal In1–xGaxP1–yAsy Nanocrystals during Cation Exchange Revealed by Electron Microscopy

B. F. Hammel, Z. Zhou, J. C. Ondry, D. V. Talapin, S. Yazdi, G. Dukovic, ACS Nano, 5c15614, (2026).

10.1021/acsnano.5c15614

13

Designing lensless imaging systems to maximize information capture

L. A. Kabuli, H. Pinkard, E. Markley, C. S. Hung, L. Waller, Optica, 13, 227, (2026).

10.1364/optica.570334

14

Accurate determination of the 3D atomic structure of amorphous materials

Y. Liao, H. Sha, C. M. O’Leary, H. Zhong, Y. Yang, J. Miao, Nature, 649, 1123-1129, (2026).

10.1038/s41586-025-09857-4

15

Errors in reconstruction of dichroic X-ray orientation tomography due to polarization rotation of the incident beam

M. A. Marcus, H. Heilman, K. Andrle, J. Plumb, Journal of Synchrotron Radiation, 33, 409-416, (2026).

10.1107/s1600577525011051

16

Direct Observation of Nanoscale Polarization Switching in HZO Ferroelectrics Using STEM-EBIC

P. Venkatesan, Y. Chen, T. P. O’Neill, H. Chan, H. Jayasankar, P. Ravikumar, Z. Wang, S. S. Fields, M. K. Lenox, W. A. Hubbard, A. Padovani, L. Larcher, G. Thareja, S. Yu, J. F. Ihlefeld, W. Kim, D. Ha, B. C. Regan, A. Khan, 2025 IEEE International Electron Devices Meeting (IEDM), 1-4, (2025).

10.1109/iedm50572.2025.11353770

17

Observation of a hidden charge density wave liquid

J. H. Lee, T. M. Sutter, G. Karapetrov, P. Musumeci, A. Kogar, Nature Physics, 22, 68-74, (2025).

10.1038/s41567-025-03108-z

18

Direct measurement of the electron wind force in cobalt nanowires

B. Zutter, M. Mecklenburg, Y. Chen, H. Chan, J. J. Lodico, B. C. Regan, Applied Physics Letters, 127, 231901, (2025).

10.1063/5.0304171

19

Implementing Bayesian optimization to compare injection regimes and pulse propagation in two stage LWFA

C. Gardner, F. Dollar, New Journal of Physics, 27, 124301, (2025).

10.1088/1367-2630/ae23f1

20

Spectral DefocusCam: Super-Resolved Hyperspectral Imaging Through Defocus

C. Foley, E. Markley, K. Yanny, L. Waller, K. Monakhova, 2025 IEEE International Conference on Computational Photography (ICCP), 1-12, (2025).

10.1109/iccp64821.2025.11143845

21

Phase matching in Vector-Beam Driven High Harmonic Generation in 3D-printed Gas Cells

D. D. Attiyah, H. H. Allison, J. J. To, P. G. Kazansky, D. D. Schmidt, C. C. Gardner, V. V. Flores, J. J. Lewis, C. G. Durfee, F. F. Dollar, Journal of the Optical Society of America B, 42, 2747, (2025).

10.1364/josab.572118

22

Structural basis for L-isoaspartyl-containing protein recognition by the human PCMTD1 cullin-RING E3 ubiquitin ligase

E. Z. Pang, B. Zhao, C. Flowers, E. Oroudjeva, J. B. Winter, V. Pandey, M. R. Sawaya, J. Wohlschlegel, J. A. Loo, J. A. Rodriguez, S. G. Clarke, Journal of Biological Chemistry, 301, 110735, (2025).

10.1016/j.jbc.2025.110735

23

Cooling-Rate-Driven Polymorphism and Vacancy Ordering in Ce2MnGe6 Intergrowth Phases

M. E. Raines, G. T. McCandless, B. C. Schundelmier, S. Cetin, T. G. Spencer, M. C. Scott, K. Wei, J. Y. Chan, Crystal Growth & Design, 25, 9405-9415, (2025).

10.1021/acs.cgd.5c01182

24

Gradient-Adjusted Underdamped Langevin Dynamics for Sampling\ast

X. Zuo, S. Osher, W. Li, SIAM/ASA Journal on Uncertainty Quantification, 13, 1735-1765, (2025).

10.1137/24m1702015

25

Measuring Chemical Shifts with Energy-Dispersive X-Ray Spectroscopy

Y. Chen, R. Jin, Y. Heffes, B. Zutter, T. P. O’Neill, J. J. Lodico, B. C. Regan, M. Mecklenburg, Physical Review Letters, 135, 157002, (2025).

10.1103/t1rs-7kr2

26

Multi-element tomography: leveraging absorption and phase contrast in soft x-ray ptychography

J. Plumb, A. Ditter, D. Kim, K. Lee, Y. Yu, D. Shapiro, X-Ray Nanoimaging: Instruments and Methods VII, 13622, 4, (2025).

10.1117/12.3063920

27

Leveraging structure-informed machine learning for fast steric zipper propensity prediction across whole proteomes

S. Zink, S. Qu, T. Holton, E. Shankar, P. Stanley, D. S. Eisenberg, M. R. Sawaya, J. A. Rodriguez, PLOS Computational Biology, 21, e1013395, (2025).

10.1371/journal.pcbi.1013395

28

Focusing of relativistic electron beams with permanent magnetic solenoid

T. T. Xu, C. R. Duncan, P. P. Denham, B. H. Schaap, A. A. Kulkarni, D. D. Garcia, S. D. Anderson, P. P. Musumeci, R. J. England, Physical Review Accelerators and Beams, 28, 082401, (2025).

10.1103/phhz-fgnl

29

An Exponential Convolutional Neural Network for Rapid Detection of Bacteria from Raman Spectra on Edge Devices

K. Liu, W. Wait, Y. Li, 2025 IEEE 68th International Midwest Symposium on Circuits and Systems (MWSCAS), 351-355, (2025).

10.1109/mwscas53549.2025.11244463

30

Point Defect Induced Potential Wells across the m-Plane of Core/Shell GaN Nanowires

S. Rezaie, G. Kusch, L. Samuelson, J. B. Wagner, S. Yazdi, physica status solidi (RRL) – Rapid Research Letters, 2500145, (2025).

10.1002/pssr.202500145

31

Structural insights into functional regulation of the human CPEB3 prion by an amyloid-forming segment

M. D. Flores, M. R. Sawaya, D. R. Boyer, S. Zink, S. Tovmasyan, A. Saucedo, L. S. Richards, C. Zee, J. Cardenas, L. Fioriti, J. A. Rodriguez, Structure, 33, 1314-1324.e5, (2025).

10.1016/j.str.2025.05.007

32

Combining MicroED and native mass spectrometry for structural discovery of enzyme-small molecule complexes

N. W. Vlahakis, C. W. Flowers, M. Liu, M. P. Agdanowski, S. Johnson, J. A. Summers, L. C. Jacobs, C. Keyser, P. Russell, S. L. Rose, J. Orlans, N. Adhami, Y. Chen, M. R. Sawaya, S. Basu, D. de Sanctis, Y. Chen, S. Wakatsuki, H. M. Nelson, J. A. Loo, Y. Tang, J. A. Rodriguez, Proceedings of the National Academy of Sciences, 122, e2503780122, (2025).

10.1073/pnas.2503780122

33

The Effect of Electrode Structure on Ferroelectric Domains in Hf0.5Zr0.5O2

T. O'Neill, Y. Chen, H. Chan, M. Lenox, W. Hubbard, J. Ihlefeld, B. Regan, Microscopy & Microanalysis, 31, ozaf048.567, (2025).

10.1093/mam/ozaf048.567

34

Structure of a new capsid form and comparison with A-, B-, and C-capsids clarify herpesvirus assembly

A. Stevens, S. Kashyap, E. Crofut, A. Alvarez-Cabrera, J. Jih, Y. Liu, Z. ng Zhou, Journal of Virology, 99, 7, (2025).

10.1128/jvi.00504-25

35

A Gaussian Parameterization for Direct Atomic Structure Identification in Electron Tomography

N. M. Singh, T. Chien, A. C. McCray, C. Ophus, L. Waller, 2025 IEEE International Conference on Computational Photography (ICCP), 1-10, (2025).

10.1109/iccp64821.2025.11143828

36

Event2Audio: Event-Based Optical Vibration Sensing

M. Cai, D. Galor, A. Kohli, J. L. Yates, L. Waller, 2025 IEEE International Conference on Computational Photography (ICCP), 1-12, (2025).

10.1109/iccp64821.2025.11143833

37

Curvature Generation and Engineering Principles from Shewanella oneidensis Multi-flagellin Flagellum

Q. Lou, H. Fan, Y. Liu, J. F. Miller, Y. Huang, Z. ng Zhou, ACS Nano, 19, 25682-25696, (2025).

10.1021/acsnano.5c02744

38

Annealing Optimization for HZO Thin Films with In-Situ STEM EBIC Characterization

Y. Chen, H. Chan, T. O’Neill, M. Lenox, W. Hubbard, J. Ihlefeld, B. Regan, Microscopy and Microanalysis, 31, ozaf048.574, (2025).

10.1093/mam/ozaf048.574

39

Chemical Shifts Observed Using Energy Dispersive Spectroscopy

M. Mecklenburg, R. Jin, Y. Heffes, B. Zutter, T. O’Neill, J. Lodico, B. Regan, Y. Chen, Microscopy and Microanalysis, 31, ozaf048.825, (2025).

10.1093/mam/ozaf048.825

40

In situ insights into antibody-mediated neutralization of a pre-fusion Junin virus glycoprotein complex

L. J. Taylor, M. R. Sawaya, J. B. Westover, C. Wang, F. Jimenez, A. J. Muñoz, J. Whitelegge, B. B. Gowen, G. F. Helguera, R. Castells-Graells, J. A. Rodriguez, Cell Reports, 44, 115971, (2025).

10.1016/j.celrep.2025.115971

41

Crystal Nucleation and Growth in High-Entropy Alloys Revealed by Atomic Electron Tomography

J. Miao, Y. Yuan, S. Moniri, Y. Yang, J. Zhou, A. Yuan, D. Kim, Y. Yang, C. Li, W. Chen, P. Ercius, Microscopy and Microanalysis, 31, ozaf048.792, (2025).

10.1093/mam/ozaf048.792

42

Secondary electron emission current mapping for nanoscale thermometry

W. Hubbard, M. Mecklenburg, H. Chan, B. Regan, Nanotechnology, 36, 265704, (2025).

10.1088/1361-6528/ade445

43

Fabrication of a novel porous silicon biomembrane for applications in organ-on-chip technology

M. C. Williams, C. Wiens, S. Genc, S. Thompson, L. Gislason, D. Blake, J. Jessing, Biomedical Microdevices, 27, 32, (2025).

10.1007/s10544-025-00760-3

44

Sample motion for structured illumination fluorescence microscopy

R. Cao, G. Meng, L. Waller, Optics Letters, 50, 4074, (2025).

10.1364/ol.560873

45

Nanoscale confinement of phonon flow and heat transport

A. Beardo, W. Chen, B. McBennett, T. Karimzadeh Sabet, E. E. Nelson, T. H. Culman, H. C. Kapteyn, J. L. Knobloch, M. M. Murnane, I. Dabo, npj Computational Materials, 11, 172, (2025).

10.1038/s41524-025-01593-7

46

Structure, identification, and characterization of the RibD-enolase complex in Francisella

X. Liu, D. Clemens, B. Lee, R. Aguirre, M. Horwitz, Z. Zhou, Protein & Cell, pwaf045, 1-6, (2025).

10.1093/procel/pwaf045

47

Demonstration and structural basis of a therapeutic DNA aptamer for SARS-CoV-2 spike protein detection

Y. Liu, K. Wang, W. Wang, S. Kashyap, J. Jih, A. Imani, T. Hsiai, Z. ng Zhou, Biosensors and Bioelectronics, 287, 117691, (2025).

10.1016/j.bios.2025.117691

48

Scattering-based super-resolution optical fluctuation imaging

S. Yudovich, G. Posnjak, L. Shani, E. Teblum, T. Liedl, J. Enderlein, S. Weiss, Optics Express, 33, 18824, (2025).

10.1364/oe.541324

49

Infectivity and structure of SARS-CoV-2 after hydrogen peroxide treatment

S. R. Aliyari, G. Xie, X. Xia, L. Wang, Z. ng Zhou, G. Cheng, mBio, 16, e03994-24, (2025).

10.1128/mbio.03994-24

50

Fast partial Fourier transforms for large-scale ptychography

R. Parada, S. Wu Fung, S. Osher, Inverse Problems and Imaging, 0-0, (2025).

10.3934/ipi.2025019

STROBE Publications

2026