Scientific Refereed

1

Persistent and partially mobile oxygen vacancies in Li-rich layered oxides

P. M. Csernica, S. S. Kalirai, W. E. Gent, K. Lim, Y. Yu, Y. Liu, S. Ahn, E. Kaeli, X. Xu, K. H. Stone, A. F. Marshall, R. Sinclair, D. A. Shapiro, M. F. Toney, W. C. Chueh, Nature Energy, (2021).

10.1038/s41560-021-00832-7

2

Phase-contrast imaging of multiply-scattering extended objects at atomic resolution by reconstruction of the scattering matrix

P. M. Pelz, H. G. Brown, S. Stonemeyer, S. D. Findlay, A. Zettl, P. Ercius, Y. Zhang, J. Ciston, M. C. Scott, C. Ophus, Physical Review Research, 3, 023159, (2021).

10.1103/physrevresearch.3.023159

3

Applying a mathematical sense-making framework to student work and its potential for curriculum design

J. D. Gifford, N. D. Finkelstein, Physical Review Physics Education Research, 17, 010138 , (2021).

10.1103/physrevphyseducres.17.010138

4

Correlative nano-spectroscopic imaging of heterogeneity in migrated petroleum in unconventional reservoir pores

R. E. Simon, S. C. Johnson, O. Khatib, M. B. Raschke, D. A. Budd, Fuel, 100, 120836, (2021).

10.1016/j.fuel.2021.120836

5

4D-STEM of Beam-Sensitive Materials

K. C. Bustillo, S. E. Zeltmann, M. Chen, J. Donohue, J. Ciston, C. Ophus, A. M. Minor, Accounts of Chemical Research, (2021).

10.1021/acs.accounts.1c00073

6

Structures of telomerase at several steps of telomere repeat synthesis

Y. He, Y. Wang, B. Liu, C. Helmling, L. Sušac, R. Cheng, Z. ng Zhou, J. Feigon, Nature, 593, 454-459, (2021).

10.1038/s41586-021-03529-9

7

Tunable mode control through myriad-mode fibers

S. Singh, S. Labouesse, R. Piestun, Journal of Lightwave Technology, 39, 2961-2970, (2021).

10.1109/jlt.2021.3057615

8

Setting Bounds on Entangled Two-Photon Absorption Cross Sections in Common Fluorophores

K. M. Parzuchowski, A. Mikhaylov, M. D. Mazurek, R. N. Wilson, D. J. Lum, T. Gerrits, C. H. Camp, M. J. Stevens, R. Jimenez, Physical Review Applied, 15, 044012 , (2021).

10.1103/physrevapplied.15.044012

9

Auto-detection of cervical collagen and elastin in Mueller matrix polarimetry microscopic images using K-NN and semantic segmentation classification

C. Roa, V. N. Du Le, M. Mahendroo, I. Saytashev, J. C. Ramella-Roman, Biomedical Optics Express, 12, 2236, (2021).

10.1364/boe.420079

10

Differential electron yield imaging with STXM

W. A. Hubbard, J. J. Lodico, X. Ling, B. T. Zutter, Y. Yu, D. A. Shapiro, B. C. Regan, Ultramicroscopy, 222, 113198, (2021).

10.1016/j.ultramic.2020.113198

11

Atomic Structure of the Trichomonas vaginalis Double-Stranded RNA Virus 2

A. Stevens, K. Muratore, Y. Cui, P. J. Johnson, Z. Hong Zhou, mBio, 12, (2021).

10.1128/mbio.02924-20

12

Millijoule few-cycle pulses from staged compression for strong and high field science

M. Stanfield, N. F. Beier, S. Hakimi, H. Allison, D. Farinella, A. E. Hussein, T. Tajima, F. Dollar, Optics Express, 29, 9123, (2021).

10.1364/oe.417404

13

Pycro-Manager: open-source software for customized and reproducible microscope control

H. Pinkard, N. Stuurman, I. E. Ivanov, N. M. Anthony, W. Ouyang, B. Li, B. Yang, M. A. Tsuchida, B. Chhun, G. Zhang, R. Mei, M. Anderson, D. P. Shepherd, I. Hunt-Isaak, R. L. Dunn, W. Jahr, S. Kato, L. A. Royer, J. R. Thiagarajah, K. W. Eliceiri, E. Lundberg, S. B. Mehta, L. Waller, Nature Methods, 18, 226-228, (2021).

10.1038/s41592-021-01087-6

14

Determining the three-dimensional atomic structure of an amorphous solid

Y. Yang, J. Zhou, F. Zhu, Y. Yuan, . J. Chang, D. S. Kim, M. Pham, A. Rana, X. Tian, Y. Yao, S. J. Osher, A. K. Schmid, L. Hu, P. Ercius, J. Miao, Nature, 592, 60-64, (2021).

10.1038/s41586-021-03354-0

15

Space-Charge Aberrations in Single-Shot Time-Resolved Transmission Electron Microscopy

P. P. Denham, P. P. Musumeci, Physical Review Applied, 15, 024050 , (2021).

10.1103/physrevapplied.15.024050

16

Probing electronic structure in berkelium and californium via an electron microscopy nanosampling approach

A. Müller, G. P. Deblonde, P. Ercius, S. E. Zeltmann, R. J. Abergel, A. M. Minor, Nature Communications, 12, 948, (2021).

10.1038/s41467-021-21189-1

17

Coherent Fourier scatterometry using orbital angular momentum beams for defect detection

B. Wang, M. Tanksalvala, Z. Zhang, Y. Esashi, N. W. Jenkins, M. M. Murnane, H. C. Kapteyn, C. Liao, Optics Express, 29, 3342-3358, (2021).

10.1364/oe.414584

18

Nondestructive, high-resolution, chemically specific 3D nanostructure characterization using phase-sensitive EUV imaging reflectometry

M. Tanksalvala, C. L. Porter, Y. Esashi, B. Wang, N. W. Jenkins, Z. Zhang, G. P. Miley, J. L. Knobloch, B. McBennett, N. Horiguchi, S. Yazdi, J. Zhou, M. N. Jacobs, C. S. Bevis, R. M. Karl, P. Johnsen, D. Ren, L. Waller, D. E. Adams, S. L. Cousin, C. Liao, J. Miao, M. Gerrity, H. C. Kapteyn, M. M. Murnane, Science Advances, 7, eabd9667, (2021).

10.1126/sciadv.abd9667

19

X-ray linear dichroic ptychography

Y. Lo, J. Zhou, A. Rana, D. Morrill, C. Gentry, B. Enders, Y. Yu, C. Sun, D. A. Shapiro, R. W. Falcone, H. C. Kapteyn, M. M. Murnane, P. A. Gilbert, J. Miao, Proceedings of the National Academy of Sciences, e2019068118, (2021).

10.1073/pnas.2019068118

20

Facile, Electrochemical Chlorination of Graphene from an Aqueous NaCl Solution

W. Li, Y. Li, K. Xu, Nano Letters, 21, 1150-1155, (2021).

10.1021/acs.nanolett.0c04641

21

4D Imaging of ZnO-Coated Nanoporous Al2O3 Aerogels by Chemically Sensitive Ptychographic Tomography: Implications for Designer Catalysts

H. Yuan, H. Yuan, T. Casagrande, D. Shapiro, Y. Yu, B. Enders, J. I. Lee, A. van Buuren, M. M. Biener, S. A. Gammon, T. F. Baumann, A. P. Hitchcock, ACS Applied Nano Materials, 4, 621-632, (2021).

10.1021/acsanm.0c02924

22

Laplacian smoothing stochastic gradient markov chain monte carlo

B. Wang, D. Zou, Q. Gu, S. J. Osher, SIAM Journal on Scientific Computing, 43, A26-A53, (2021).

10.1137/19m1294356

23

An ultrahigh-resolution soft x-ray microscope for quantitative analysis of chemically heterogeneous nanomaterials

D. A. Shapiro, S. Babin, R. S. Celestre, W. Chao, R. P. Conley, P. Denes, B. Enders, P. Enfedaque, S. James, J. M. Joseph, H. Krishnan, S. Marchesini, K. Muriki, K. Nowrouzi, S. R. Oh, H. Padmore, T. Warwick, L. Yang, V. V. Yashchuk, Y. Yu, J. Zhao, Science Advances, 6, eabc4904, (2020).

10.1126/sciadv.abc4904

24

Impact of a course transformation on students’ reasoning about measurement uncertainty

B. Pollard, A. Werth, R. Hobbs, H. J. Lewandowski, Physical Review Physics Education Research, 16, 020160, (2020).

10.1103/physrevphyseducres.16.020160

25

Refining a model for understanding and characterizing instructor pedagogy in informal physics learning environments

M. B. Bennett, B. Fiedler, N. D. Finkelstein, Physical Review Physics Education Research, 16, 020137, (2020).

10.1103/physrevphyseducres.16.020137

26

Smart Scattering Scanning Near-Field Optical Microscopy

S. Labouesse, S. C. Johnson, H. A. Bechtel, M. B. Raschke, R. Piestun, ACS Photonics, 7, 3346-3352, (2020).

10.1021/acsphotonics.0c00553

27

A review of polarization-based imaging technologies for clinical and preclinical applications

J. Ramella-Roman, I. Saytashev, M. Piccini, Journal of Optics, 22, 123001, (2020).

10.1088/2040-8986/abbf8a

28

Mesophasic organization of GABAA receptors in hippocampal inhibitory synapses

Y. Liu, C. Tao, X. Zhang, W. Xia, D. Shi, L. Qi, C. Xu, R. Sun, X. Li, P. Lau, Z. Hong Zhou, G. Bi, Nature Neuroscience, 1589-1596, (2020).

10.1038/s41593-020-00729-w

29

Ptychographic atomic electron tomography: Towards three-dimensional imaging of individual light atoms in materials

D. J. Chang, D. S. Kim, A. Rana, X. Tian, J. Zhou, P. Ercius, J. Miao, Physical Review B, 102, 174101, (2020).

10.1103/physrevb.102.174101

30

Depth-resolved Mueller matrix polarimetry microscopy of the rat cornea

V. N. Du Le, I. Saytashev, S. Saha, P. F. Lopez, M. Laughrey, J. C. Ramella-Roman, Biomedical Optics Express, 5982, (2020).

10.1364/boe.402201

31

Structures from the Mesophase: MicroED Targets Crystals Extracted from LCP

M. Gallagher-Jones, J. A. Rodriguez, Structure, 28, 1084-1086, (2020).

10.1016/j.str.2020.09.005

32

Spectral DiffuserCam: lensless snapshot hyperspectral imaging with a spectral filter array

K. Monakhova, K. Yanny, N. Aggarwal, L. Waller, Optica, 7, 1298-1307, (2020).

10.1364/optica.397214

33

A Calcium Sensor Discovered in Bluetongue Virus Nonstructural Protein 2 Is Critical for Virus Replication

S. Rahman, A. Kerviel, B. Mohl, Y. He, Z. Hong Zhou, P. Roy, Journal of Virology, (2020).

10.1128/jvi.01099-20

34

Memory-Efficient Learning for Large-Scale Computational Imaging

M. Kellman, K. Zhang, E. Markley, J. Tamir, E. Bostan, M. Lustig, L. Waller, IEEE Transactions on Computational Imaging, 6, 1403-1414, (2020).

10.1109/tci.2020.3025735

35

Categorical framework for mathematical sense making in physics

J. D. Gifford, N. D. Finkelstein, Physical Review Physics Education Research, 16, 020121, (2020).

10.1103/physrevphyseducres.16.020121

36

An ultra-compact x-ray free-electron laser

J. Rosenzweig, N. Majernik, R. Robles, G. Andonian, O. Camacho, A. Fukasawa, A. Kogar, G. Lawler, J. Miao, P. Musumeci, B. Naranjo, Y. Sakai, R. Candler, B. Pound, C. Pellegrini, C. Emma, A. Halavanau, J. Hastings, Z. Li, M. Nasr, S. Tantawi, P. P. Anisimov, B. Carlsten, F. Krawczyk, E. Simakov, L. Faillace, M. Ferrario, B. Spataro, S. Karkare, J. Maxson, Y. Ma, J. Wurtele, A. Murokh, A. Zholents, A. Cianchi, D. Cocco, S. van der Geer, New Journal of Physics, 093067, (2020).

10.1088/1367-2630/abb16c

37

Charging-driven coarsening and melting of a colloidal nanoparticle monolayer at an ionic liquid-vacuum interface

C. G. Bischak, J. G. Raybin, J. W. Kruppe, N. S. Ginsberg, Soft Matter, 9578-9589, (2020).

10.1039/d0sm01395a

38

Tilted fluctuation electron microscopy

E. Kennedy, N. Reynolds, L. Rangel DaCosta, F. Hellman, C. Ophus, M. C. Scott, Applied Physics Letters, 117, 091903, (2020).

10.1063/5.0015532

39

Process of transforming of an introductory mechanics lab course at Fort Lewis College

A. Werth, H. J. Lewandowski, 2020 Physics Education Research Conference Proceedings, (2020).

10.1119/perc.2020.pr.werth

40

Potential of Attosecond Coherent Diffractive Imaging

A. Rana, J. Zhang, M. Pham, A. Yuan, Y. Lo, H. Jiang, S. J. Osher, J. Miao, Physical Review Letters, 125, 086101, (2020).

10.1103/physrevlett.125.086101

41

Engineering Mesoporous Silica Nanoparticles for Targeted Alpha Therapy against Breast Cancer

R. M. Pallares, P. Agbo, X. Liu, D. D. An, S. S. Gauny, S. E. Zeltmann, A. M. Minor, R. J. Abergel, ACS Applied Materials & Interfaces, 12, 40078-40084, (2020).

10.1021/acsami.0c11051

42

Structural basis for STAT2 suppression by flavivirus NS5

B. Wang, S. Thurmond, K. Zhou, M. T. Sánchez-Aparicio, J. Fang, J. Lu, L. Gao, W. Ren, Y. Cui, E. C. Veit, H. Hong, M. J. Evans, S. E. O’Leary, A. García-Sastre, Z. Hong Zhou, R. Hai, J. Song, Nature Structural & Molecular Biology, (2020).

10.1038/s41594-020-0472-y

43

Attosecond light science and its application for probing quantum materials

X. Shi, C. Liao, Z. Tao, E. Cating-Subramanian, M. Murnane, C. Hernández-García, H. Kapteyn, Journal of Physics B: Atomic, Molecular and Optical Physics, 53, 184008, (2020).

10.1088/1361-6455/aba2fb

44

Liquid-like Interfaces Mediate Structural Phase Transitions in Lead Halide Perovskites

C. G. Bischak, M. Lai, Z. Fan, D. Lu, P. David, D. Dong, H. Chen, A. S. Etman, T. Lei, J. Sun, M. Grünwald, D. T. Limmer, P. Yang, N. S. Ginsberg, Matter, 3, 534-545, (2020).

10.1016/j.matt.2020.07.015

45

Electron-Transparent Thermoelectric Coolers Demonstrated with Nanoparticle and Condensation Thermometry

W. A. Hubbard, M. Mecklenburg, J. J. Lodico, Y. Chen, X. Ling, R. Patil, W. ew Kessel, G. K. Flatt, H. Chan, B. Vareskic, G. Bal, B. Zutter, B. C. Regan, ACS Nano, 11510-11517, (2020).

10.1021/acsnano.0c03958

46

Atomic Structures of Anthrax Prechannel Bound with Full-Length Lethal and Edema Factors

K. Zhou, S. Liu, N. J. Hardenbrook, Y. Cui, B. A. Krantz, Z. Hong Zhou, Structure, 28, 879-887.e3, (2020).

10.1016/j.str.2020.05.009

47

Fragment-based determination of a proteinase K structure from MicroED data using ARCIMBOLDO_SHREDDER

L. S. Richards, C. Millán, J. Miao, M. W. Martynowycz, M. R. Sawaya, T. Gonen, R. J. Borges, I. Usón, J. A. Rodriguez, Acta Crystallographica Section D Structural Biology, 76, 703-712, (2020).

10.1107/s2059798320008049

48

Synchrotron infrared nano-spectroscopy and -imaging

H. A. Bechtel, S. C. Johnson, O. Khatib, E. A. Muller, M. B. Raschke, Surface Science Reports, 75, 100493, (2020).

10.1016/j.surfrep.2020.100493

49

Structures of capsid and capsid-associated tegument complex inside the Epstein–Barr virus

W. Liu, Y. Cui, C. Wang, Z. Li, D. Gong, X. Dai, G. Bi, R. Sun, Z. Hong Zhou, Nature Microbiology, 5, 1285-1298, (2020).

10.1038/s41564-020-0758-1

50

Disorder recovers the Wiedemann-Franz law in the metallic phase of VO2

L. Jin, S. E. Zeltmann, H. Choe, H. Liu, F. I. Allen, A. M. Minor, J. Wu, Physical Review B, 102, 041120(R), (2020).

10.1103/physrevb.102.041120

Publications

STROBE Publications

2021