Scientific Refereed

1

Relativistic ultrafast electron diffraction at high repetition rates

K. M. Siddiqui, D. B. Durham, F. Cropp, F. Ji, S. Paiagua, C. Ophus, N. C. Andresen, L. Jin, J. Wu, S. Wang, X. Zhang, W. You, M. M. Murnane, M. Centurion, X. Wang, D. S. Slaughter, R. A. Kaindl, P. Musumeci, A. M. Minor, D. Filippetto, Structural Dynamics, 10, 064302, (2023).

10.1063/4.0000203

2

Solving complex nanostructures with ptychographic atomic electron tomography

P. M. Pelz, S. M. Griffin, S. Stonemeyer, D. Popple, H. DeVyldere, P. Ercius, A. Zettl, M. C. Scott, C. Ophus, Nature Communications, 14, 7906, (2023).

10.1038/s41467-023-43634-z

3

Enhancing students’ views of experimental physics through a course-based undergraduate research experience

A. Werth, C. G. West, N. Sulaiman, H. J. Lewandowski, Physical Review Physics Education Research, 29, 020151, (2023).

10.1103/physrevphyseducres.19.020151

4

Hierarchical organization and assembly of the archaeal cell sheath from an amyloid-like protein

H. Wang, J. Zhang, D. Toso, S. Liao, F. Sedighian, R. Gunsalus, Z. Hong Zhou, Nature Communications, (2023).

10.1038/s41467-023-42368-2

5

A composite electrodynamic mechanism to reconcile spatiotemporally resolved exciton transport in quantum dot superlattices

R. Yuan, T. D. Roberts, R. M. Brinn, A. A. Choi, H. H. Park, C. Yan, J. C. Ondry, S. Khorasani, D. J. Masiello, K. Xu, A. P. Alivisatos, N. S. Ginsberg, Science Advances, 9, (2023).

10.1126/sciadv.adh2410

6

Investigating changes in student views of measurement uncertainty in an introductory physics lab course using clustering algorithms

A. Werth, B. Pollard, R. Hobbs, H. J. Lewandowski, Physical Review Physics Education Research, 19, 020146, (2023).

10.1103/physrevphyseducres.19.020146

7

Coherent EUV Light Sources Based on High-Order Harmonic Generation: Principles and Applications in Nanotechnology

H. Kapteyn, M. M. Murnane, Y. Esashi, M. Tanksalvala, J. L. Knobloch, C. Liao, D. D. Hickstein, C. Bargsten, K. Dorney, J. Petersen, Photon Sources for Lithography and Metrology, 351, 1302, (2023).

8

High-fidelity ptychographic imaging of highly periodic structures enabled by vortex high harmonic beams

B. Wang, N. J. Brooks, P. Johnsen, N. W. Jenkins, Y. Esashi, I. Binnie, M. Tanksalvala, H. C. Kapteyn, M. M. Murnane, Optica, 10, 1245, (2023).

10.1364/optica.498619

9

Detecting, Distinguishing, and Spatiotemporally Tracking Photogenerated Charge and Heat at the Nanoscale

H. L. Weaver, C. M. Went, J. Wong, D. Jasrasaria, E. Rabani, H. A. Atwater, N. S. Ginsberg, ACS Nano, 17, 19011-19021, (2023).

10.1021/acsnano.3c04607

10

FAP106 is an interaction hub for assembling microtubule inner proteins at the cilium inner junction

M. M. Shimogawa, A. S. Wijono, H. Wang, J. Zhang, J. Sha, N. Szombathy, S. Vadakkan, P. Pelayo, K. Jonnalagadda, J. Wohlschlegel, Z. Hong Zhou, K. L. Hill, Nature Communications, 14, 5225, (2023).

10.1038/s41467-023-40230-z

11

Uncovering polar vortex structures by inversion of multiple scattering with a stacked Bloch wave model

S. E. Zeltmann, S. Hsu, H. G. Brown, S. Susarla, R. Ramesh, A. M. Minor, C. Ophus, Ultramicroscopy, 250, 113732, (2023).

10.1016/j.ultramic.2023.113732

12

Protein target highlights in CASP15: Analysis of models by structure providers

L. T. Alexander, J. Durairaj, A. Kryshtafovych, L. A. Abriata, Y. Bayo, G. Bhabha, C. Breyton, S. G. Caulton, J. Chen, S. Degroux, D. C. Ekiert, B. S. Erlandsen, P. L. Freddolino, D. Gilzer, C. Greening, J. M. Grimes, R. Grinter, M. Gurusaran, M. D. Hartmann, C. J. Hitchman, J. R. Keown, A. Kropp, P. Kursula, A. L. Lovering, B. Lemaitre, A. Lia, S. Liu, M. Logotheti, S. Lu, S. Markússon, M. D. Miller, G. Minasov, H. H. Niemann, F. Opazo, G. N. Phillips, O. R. Davies, S. Rommelaere, M. Rosas‐Lemus, P. Roversi, K. Satchell, N. Smith, M. A. Wilson, K. Wu, X. Xia, H. Xiao, W. Zhang, Z. Hong Zhou, K. Fidelis, M. Topf, J. Moult, T. Schwede, Proteins: Structure, Function, and Bioinformatics, 1-29, (2023).

10.1002/prot.26545

13

Imaging the electron charge density in monolayer MoS2 at the Ångstrom scale

J. Martis, S. Susarla, A. Rayabharam, C. Su, T. Paule, P. Pelz, C. Huff, X. Xu, H. Li, M. Jaikissoon, V. Chen, E. Pop, K. Saraswat, A. Zettl, N. R. Aluru, R. Ramesh, P. Ercius, A. Majumdar, Nature Communications, 14, 4363, (2023).

10.1038/s41467-023-39304-9

14

Operando spectral imaging of the lithium ion battery’s solid-electrolyte interphase

J. J. Lodico, M. Mecklenburg, H. Chan, Y. Chen, X. Ling, B. C. Regan, Science Advances, 9, (2023).

10.1126/sciadv.adg5135

15

Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing

S. Liu, H. Wang, X. Li, F. Zhang, J. J. Lee, Z. Li, C. Yu, J. J. Hu, X. Zhao, T. Suematsu, A. L. Alvarez-Cabrera, Q. Liu, L. Zhang, L. Huang, I. Aphasizheva, R. Aphasizhev, Z. Hong Zhou, Science, 381, eadg4725, (2023).

10.1126/science.adg4725

16

Two-color high-harmonic generation from relativistic plasma mirrors

N. F. Beier, F. F. Dollar, Physical Review E, 108, 015201, (2023).

10.1103/physreve.108.015201

17

Scanning transmission X-ray microscopy at the Advanced Light Source

T. Feggeler, A. Levitan, M. A. Marcus, H. Ohldag, D. A. Shapiro, Journal of Electron Spectroscopy and Related Phenomena, 267, 147381, (2023).

10.1016/j.elspec.2023.147381

18

In Situ and Emerging Transmission Electron Microscopy for Catalysis Research

H. Chao, K. Venkatraman, S. Moniri, Y. Jiang, X. Tang, S. Dai, W. Gao, J. Miao, M. Chi, Chemical Reviews, 123, 8347-8394, (2023).

10.1021/acs.chemrev.2c00880

19

Structure of LARP7 Protein p65–telomerase RNA Complex in Telomerase Revealed by Cryo-EM and NMR

Y. Wang, Y. He, Y. Wang, Y. Yang, M. Singh, C. D. Eichhorn, X. Cheng, Y. Jiang, Z. Hong Zhou, J. Feigon, Journal of Molecular Biology, 435, 168044, (2023).

10.1016/j.jmb.2023.168044

20

Coronal Heating as Determined by the Solar Flare Frequency Distribution Obtained by Aggregating Case Studies

Y. Wang, Y. He, Y. Wang, Y. Yang, M. Singh, C. D. Eichhorn, X. Cheng, Y. Jiang, Z. Hong Zhou, J. Feigon, The Astrophysical Journal, 948, (2023).

10.3847/1538-4357/accc89

21

Evidence for Bootstrap Percolation Dynamics in a Photoinduced Phase Transition

T. Carbin, X. Zhang, A. B. Culver, H. Zhao, A. Zong, R. Acharya, C. J. Abbamonte, R. Roy, G. Cao, A. Kogar, Physical Review Letters, 130, 186902, (2023).

10.1103/physrevlett.130.186902

22

Nonadditive Interactions Unlock Small-Particle Mobility in Binary Colloidal Monolayers

J. G. Raybin, R. B. Wai, N. S. Ginsberg, ACS Nano, 17, 8303-8314, (2023).

10.1021/acsnano.2c12668

23

Relationships between Compositional Heterogeneity and Electronic Spectra of (Ga1-xZnX)(N1-xOX) Nanocrystals Revealed by Valence Electron Energy Loss Spectroscopy

B. F. Hammel, L. G. Hall, L. M. Pellows, O. M. Pearce, P. Tongying, S. Yazdi, G. Dukovic, The Journal of Physical Chemistry C, 127, 7762-7771, (2023).

10.1021/acs.jpcc.3c00572

24

Accurate real space iterative reconstruction (RESIRE) algorithm for tomography

M. Pham, Y. Yuan, A. Rana, S. Osher, J. Miao, Scientific Reports, 13, (2023).

10.1038/s41598-023-31124-7

25

Evaluation protocol for revealing magnonic contrast in TR-STXM measurements

B. Zingsem, T. Feggeler, R. Meckenstock, D. Spoddig, T. Schaffers, S. Pile, H. Ohldag, M. Farle, H. Wende, A. Ney, K. Ollefs, AIP Advances, 13, 045020, (2023).

10.1063/5.0145753

26

Cryo-EM structure of amyloid fibril formed by α-synuclein hereditary A53E mutation reveals a distinct protofilament interface

C. Sun, K. Zhou, P. DePaola, W. Shin, T. Hillyer, M. R. Sawaya, R. Zhu, C. Peng, Z. Hong Zhou, L. Jiang, Journal of Biological Chemistry, 299, 104566, (2023).

10.1016/j.jbc.2023.104566

27

Student experiences with authentic research in a remote, introductory course-based undergraduate research experience in physics

K. A. Oliver, A. Werth, H. J. Lewandowski, Physical Review Physics Education Research, 19, 010124, (2023).

10.1103/physrevphyseducres.19.010124

28

Operando Label-Free Optical Imaging of Solution-Phase Ion Transport and Electrochemistry

J. K. Utterback, A. J. King, L. Belman-Wells, D. M. Larson, L. M. Hamerlynck, A. Z. Weber, N. S. Ginsberg, ACS Energy Letters, 8, 1785-1792, (2023).

10.1021/acsenergylett.3c00129

29

Experimental Characterization of Photoemission from Plasmonic Nanogroove Arrays

C. M. Pierce, D. B. Durham, F. Riminucci, S. Dhuey, I. Bazarov, J. Maxson, A. M. Minor, D. Filippetto, Physical Review Applied, 19, 034034, (2023).

10.1103/physrevapplied.19.034034

30

Excitation Intensity-Dependent Quantum Yield of Semiconductor Nanocrystals

S. Ghosh, U. Ross, A. M. Chizhik, Y. Kuo, B. Jeong, W. Bae, K. Park, J. Li, D. Oron, S. Weiss, J. Enderlein, A. I. Chizhik, The Journal of Physical Chemistry Letters, 14, 2702-2707, (2023).

10.1021/acs.jpclett.3c00143

31

Universal Behavior of Highly Confined Heat Flow in Semiconductor Nanosystems: From Nanomeshes to Metalattices

B. McBennett, A. Beardo, E. E. Nelson, B. Abad, T. D. Frazer, A. Adak, Y. Esashi, B. Li, H. C. Kapteyn, M. M. Murnane, J. L. Knobloch, Nano Letters, 23, 2129-2136, (2023).

10.1021/acs.nanolett.2c04419

32

Students’ views about experimental physics in a large-enrollment introductory lab focused on experimental scientific practices

N. Sulaiman, A. Werth, H. J. Lewandowski, Physical Review Physics Education Research, 19, 010116, (2023).

10.1103/physrevphyseducres.19.010116

33

Identification of Unknown Nanofabrication Chemicals Using Raman Spectroscopy and Deep Learning

N. Theobald, D. Ledvina, K. Kukula, S. Maines, K. Hasz, M. Raschke, J. Crawford, J. Jessing, Y. Li, IEEE Sensors Journal, 23, 7910-7916, (2023).

10.1109/jsen.2023.3249668

34

Nanoscale mapping of point defect concentrations with 4D-STEM

S. H. Mills, S. E. Zeltmann, P. Ercius, A. A. Kohnert, B. P. Uberuaga, A. M. Minor, Acta Materialia, 1, 118721, (2023).

10.1016/j.actamat.2023.118721

35

Structural basis of HIV-1 Vif-mediated E3 ligase targeting of host APOBEC3H

F. Ito, A. L. Alvarez-Cabrera, K. Kim, Z. ng Zhou, X. S. Chen, Nature Communications, 14, 5241, (2023).

10.1038/s41467-023-40955-x

36

Fragment-Based Ab Initio Phasing of Peptidic Nanocrystals by MicroED

L. S. Richards, M. D. Flores, C. Millán, C. Glynn, C. Zee, M. R. Sawaya, M. Gallagher-Jones, R. J. Borges, I. Usón, J. A. Rodriguez, ACS Bio & Med Chem Au, 3, 201-210, (2023).

10.1021/acsbiomedchemau.2c00082

37

Native structure of mosquito salivary protein uncovers domains relevant to pathogen transmission

S. Liu, X. Xia, E. Calvo, Z. Hong Zhou, Nature Communications, 14, 899, (2023).

10.1038/s41467-023-36577-y

38

Asymmetric reconstruction of the aquareovirus core at near-atomic resolution and mechanism of transcription initiation

A. Stevens, Y. Cui, S. Shivakoti, Z. Zhou, Protein & Cell, 14, 1-5, (2023).

10.1093/procel/pwad002

39

Three-dimensional topological magnetic monopoles and their interactions in a ferromagnetic meta-lattice

A. Rana, C. Liao, E. Iacocca, J. Zou, M. Pham, X. Lu, E. Subramanian, Y. Lo, S. A. Ryan, C. S. Bevis, R. M. Karl, A. J. Glaid, J. Rable, P. Mahale, J. Hirst, T. Ostler, W. Liu, C. M. O’Leary, Y. Yu, K. Bustillo, H. Ohldag, D. A. Shapiro, S. Yazdi, T. E. Mallouk, S. J. Osher, H. C. Kapteyn, V. H. Crespi, J. V. Badding, Y. Tserkovnyak, M. M. Murnane, J. Miao, Nature Nanotechnology, 18, 227–232, (2023).

10.1038/s41565-022-01311-0

40

Multimodal Characterization of Crystal Structure and Formation in Rubrene Thin Films Reveals Erasure of Orientational Discontinuities

J. A. Tan, J. T. Dull, S. E. Zeltmann, J. A. Tulyagankhodjaev, H. M. Johnson, A. Liebman‐Peláez, B. D. Folie, S. A. Dönges, O. Khatib, J. G. Raybin, T. D. Roberts, L. M. Hamerlynck, C. N. Tanner, J. Lee, C. Ophus, K. C. Bustillo, M. B. Raschke, H. Ohldag, A. M. Minor, B. P. Rand, N. S. Ginsberg, Advanced Functional Materials, 33, 2207867, (2023).

10.1002/adfm.202207867

41

Observation of spin-momentum locked surface states in amorphous Bi2Se3

P. Corbae, S. Ciocys, D. Varjas, E. Kennedy, S. Zeltmann, M. Molina-Ruiz, S. M. Griffin, C. Jozwiak, Z. Chen, L. Wang, A. M. Minor, M. Scott, A. G. Grushin, A. Lanzara, F. Hellman, Nature Materials, 22, 200-206, (2023).

10.1038/s41563-022-01458-0

42

Optical reflectance imaging reveals interlayer coupling in mechanically stacked MoS2 and WS2 bilayers

V. Nguyen, W. Li, J. Ager, K. Xu, H. Taylor, Optics Express, 31, 3291, (2023).

10.1364/oe.473397

43

Deep-Learning Electron Diffractive Imaging

D. J. Chang, C. M. O’Leary, C. Su, D. A. Jacobs, S. Kahn, A. Zettl, J. Ciston, P. Ercius, J. Miao, Physical Review Letters, 130, 016101, (2023).

10.1103/physrevlett.130.016101

44

Exceeding the limits of algorithmic self-calibrated aberration recovery in Fourier ptychography

E. Li, S. Sherwin, G. Gunjala, L. Waller, Optics Continuum, 2, 119, (2023).

10.1364/optcon.475990

45

Discovery, structure, and function of filamentous 3-methylcrotonyl-CoA carboxylase

J. J. Hu, J. J. Lee, Y. Liu, C. Yu, L. Huang, I. Aphasizheva, R. Aphasizhev, Z. Hong Zhou, Structure, 31, 100-110.e4, (2023).

10.1016/j.str.2022.11.015

46

CryoEM structures of anion exchanger 1 capture multiple states of inward- and outward-facing conformations

H. R. Zhekova, J. Jiang, W. Wang, K. Tsirulnikov, G. Kayık, H. Khan, R. Azimov, N. Abuladze, L. Kao, D. Newman, S. u. Noskov, D. er Tieleman, Z. Hong Zhou, A. Pushkin, I. Kurtz, Communications Biology, 5, (2022).

10.1038/s42003-022-04306-8

47

Disentangling multiple scattering with deep learning: application to strain mapping from electron diffraction patterns

J. Munshi, A. Rakowski, B. H. Savitzky, S. E. Zeltmann, J. Ciston, M. Henderson, S. Cholia, A. M. Minor, M. Y. Chan, C. Ophus, npj Computational Materials, 8, (2022).

10.1038/s41524-022-00939-9

48

Visible-Light Azidation and Chemical Patterning of Graphene via Photoredox Catalysis

W. Li, Y. Li, B. Wang, K. Xu, The Journal of Physical Chemistry C, 126, 21281-21286, (2022).

10.1021/acs.jpcc.2c07399

49

Ultrafast electron diffraction: Visualizing dynamic states of matter

D. D. Filippetto, P. P. Musumeci, R. K. Li, B. J. Siwick, M. R. Otto, M. M. Centurion, J. F. Nunes, Reviews of Modern Physics, 94, 045004, (2022).

10.1103/revmodphys.94.045004

50

Accurate quantification of lattice temperature dynamics from ultrafast electron diffraction of single-crystal films using dynamical scattering simulations

D. B. Durham, C. Ophus, K. M. Siddiqui, A. M. Minor, D. Filippetto, Structural Dynamics, 9, 064302, (2022).

10.1063/4.0000170

Publications

STROBE Publications

2023