Publications

1

Uncovering polar vortex structures by inversion of multiple scattering with a stacked Bloch wave model

S. E. Zeltmann, S. Hsu, H. G. Brown, S. Susarla, R. Ramesh, A. M. Minor, C. Ophus, Ultramicroscopy, 250, 113732, (2023).

10.1016/j.ultramic.2023.113732

2

Protein target highlights in CASP15: Analysis of models by structure providers

L. T. Alexander, J. Durairaj, A. Kryshtafovych, L. A. Abriata, Y. Bayo, G. Bhabha, C. Breyton, S. G. Caulton, J. Chen, S. Degroux, D. C. Ekiert, B. S. Erlandsen, P. L. Freddolino, D. Gilzer, C. Greening, J. M. Grimes, R. Grinter, M. Gurusaran, M. D. Hartmann, C. J. Hitchman, J. R. Keown, A. Kropp, P. Kursula, A. L. Lovering, B. Lemaitre, A. Lia, S. Liu, M. Logotheti, S. Lu, S. Markússon, M. D. Miller, G. Minasov, H. H. Niemann, F. Opazo, G. N. Phillips, O. R. Davies, S. Rommelaere, M. Rosas‐Lemus, P. Roversi, K. Satchell, N. Smith, M. A. Wilson, K. Wu, X. Xia, H. Xiao, W. Zhang, Z. ng Zhou, K. Fidelis, M. Topf, J. Moult, T. Schwede, Proteins: Structure, Function, and Bioinformatics, 1-29, (2023).

10.1002/prot.26545

3

Imaging the electron charge density in monolayer MoS2 at the Ångstrom scale

J. Martis, S. Susarla, A. Rayabharam, C. Su, T. Paule, P. Pelz, C. Huff, X. Xu, H. Li, M. Jaikissoon, V. Chen, E. Pop, K. Saraswat, A. Zettl, N. R. Aluru, R. Ramesh, P. Ercius, A. Majumdar, Nature Communications, 14, 4363, (2023).

10.1038/s41467-023-39304-9

4

Two-color high-harmonic generation from relativistic plasma mirrors

N. F. Beier, F. F. Dollar, Physical Review E, 108, 015201, (2023).

10.1103/physreve.108.015201

5

Structural basis of gRNA stabilization and mRNA recognition in trypanosomal RNA editing

S. Liu, H. Wang, X. Li, F. Zhang, J. J. Lee, Z. Li, C. Yu, J. J. Hu, X. Zhao, T. Suematsu, A. L. Alvarez-Cabrera, Q. Liu, L. Zhang, L. Huang, I. Aphasizheva, R. Aphasizhev, Z. ng Zhou, Science, 381, eadg4725, (2023).

10.1126/science.adg4725

6

Scanning transmission X-ray microscopy at the Advanced Light Source

T. Feggeler, A. Levitan, M. A. Marcus, H. Ohldag, D. A. Shapiro, Journal of Electron Spectroscopy and Related Phenomena, 267, 147381, (2023).

10.1016/j.elspec.2023.147381

7

In Situ and Emerging Transmission Electron Microscopy for Catalysis Research

H. Chao, K. Venkatraman, S. Moniri, Y. Jiang, X. Tang, S. Dai, W. Gao, J. Miao, M. Chi, Chemical Reviews, 123, 8347-8394, (2023).

10.1021/acs.chemrev.2c00880

8

Evidence for Bootstrap Percolation Dynamics in a Photoinduced Phase Transition

T. Carbin, X. Zhang, A. B. Culver, H. Zhao, A. Zong, R. Acharya, C. J. Abbamonte, R. Roy, G. Cao, A. Kogar, Physical Review Letters, 130, 186902, (2023).

10.1103/physrevlett.130.186902

9

Nonadditive Interactions Unlock Small-Particle Mobility in Binary Colloidal Monolayers

J. G. Raybin, R. B. Wai, N. S. Ginsberg, ACS Nano, 17, 8303-8314, (2023).

10.1021/acsnano.2c12668

10

Relationships between Compositional Heterogeneity and Electronic Spectra of (Ga1-xZnX)(N1-xOX) Nanocrystals Revealed by Valence Electron Energy Loss Spectroscopy

B. F. Hammel, L. G. Hall, L. M. Pellows, O. M. Pearce, P. Tongying, S. Yazdi, G. Dukovic, The Journal of Physical Chemistry C, 127, 7762-7771, (2023).

10.1021/acs.jpcc.3c00572

11

Accurate real space iterative reconstruction (RESIRE) algorithm for tomography

M. Pham, Y. Yuan, A. Rana, S. Osher, J. Miao, Scientific Reports, 13, (2023).

10.1038/s41598-023-31124-7

12

Evaluation protocol for revealing magnonic contrast in TR-STXM measurements

B. Zingsem, T. Feggeler, R. Meckenstock, D. Spoddig, T. Schaffers, S. Pile, H. Ohldag, M. Farle, H. Wende, A. Ney, K. Ollefs, AIP Advances, 13, 045020, (2023).

10.1063/5.0145753

13

Cryo-EM structure of amyloid fibril formed by α-synuclein hereditary A53E mutation reveals a distinct protofilament interface

C. Sun, K. Zhou, P. DePaola, W. Shin, T. Hillyer, M. R. Sawaya, R. Zhu, C. Peng, Z. ng Zhou, L. Jiang, Journal of Biological Chemistry, 299, 104566, (2023).

10.1016/j.jbc.2023.104566

14

Student experiences with authentic research in a remote, introductory course-based undergraduate research experience in physics

K. A. Oliver, A. Werth, H. J. Lewandowski, Physical Review Physics Education Research, 19, 010124, (2023).

10.1103/physrevphyseducres.19.010124

15

Operando Label-Free Optical Imaging of Solution-Phase Ion Transport and Electrochemistry

J. K. Utterback, A. J. King, L. Belman-Wells, D. M. Larson, L. M. Hamerlynck, A. Z. Weber, N. S. Ginsberg, ACS Energy Letters, 8, 1785-1792, (2023).

10.1021/acsenergylett.3c00129

16

Experimental Characterization of Photoemission from Plasmonic Nanogroove Arrays

C. M. Pierce, D. B. Durham, F. Riminucci, S. Dhuey, I. Bazarov, J. Maxson, A. M. Minor, D. Filippetto, Physical Review Applied, 19, 034034, (2023).

10.1103/physrevapplied.19.034034

17

Excitation Intensity-Dependent Quantum Yield of Semiconductor Nanocrystals

S. Ghosh, U. Ross, A. M. Chizhik, Y. Kuo, B. Jeong, W. Bae, K. Park, J. Li, D. Oron, S. Weiss, J. Enderlein, A. I. Chizhik, The Journal of Physical Chemistry Letters, 14, 2702-2707, (2023).

10.1021/acs.jpclett.3c00143

18

Universal Behavior of Highly Confined Heat Flow in Semiconductor Nanosystems: From Nanomeshes to Metalattices

B. McBennett, A. Beardo, E. E. Nelson, B. Abad, T. D. Frazer, A. Adak, Y. Esashi, B. Li, H. C. Kapteyn, M. M. Murnane, J. L. Knobloch, Nano Letters, 23, 2129-2136, (2023).

10.1021/acs.nanolett.2c04419

19

Students’ views about experimental physics in a large-enrollment introductory lab focused on experimental scientific practices

N. Sulaiman, A. Werth, H. J. Lewandowski, Physical Review Physics Education Research, 19, 010116, (2023).

10.1103/physrevphyseducres.19.010116

20

Nanoscale mapping of point defect concentrations with 4D-STEM

S. H. Mills, S. E. Zeltmann, P. Ercius, A. A. Kohnert, B. P. Uberuaga, A. M. Minor, Acta Materialia, 1, 118721, (2023).

10.1016/j.actamat.2023.118721

21

Native structure of mosquito salivary protein uncovers domains relevant to pathogen transmission

S. Liu, X. Xia, E. Calvo, Z. ng Zhou, Nature Communications, 14, 899, (2023).

10.1038/s41467-023-36577-y

22

Asymmetric reconstruction of the aquareovirus core at near-atomic resolution and mechanism of transcription initiation

A. Stevens, Y. Cui, S. Shivakoti, Z. Zhou, Protein & Cell, XX, 1-5, (2023).

10.1093/procel/pwad002

23

Three-dimensional topological magnetic monopoles and their interactions in a ferromagnetic meta-lattice

A. Rana, C. Liao, E. Iacocca, J. Zou, M. Pham, X. Lu, E. Subramanian, Y. Lo, S. A. Ryan, C. S. Bevis, R. M. Karl, A. J. Glaid, J. Rable, P. Mahale, J. Hirst, T. Ostler, W. Liu, C. M. O’Leary, Y. Yu, K. Bustillo, H. Ohldag, D. A. Shapiro, S. Yazdi, T. E. Mallouk, S. J. Osher, H. C. Kapteyn, V. H. Crespi, J. V. Badding, Y. Tserkovnyak, M. M. Murnane, J. Miao, Nature Nanotechnology, (2023).

10.1038/s41565-022-01311-0

24

Multimodal Characterization of Crystal Structure and Formation in Rubrene Thin Films Reveals Erasure of Orientational Discontinuities

J. A. Tan, J. T. Dull, S. E. Zeltmann, J. A. Tulyagankhodjaev, H. M. Johnson, A. Liebman‐Peláez, B. D. Folie, S. A. Dönges, O. Khatib, J. G. Raybin, T. D. Roberts, L. M. Hamerlynck, C. N. Tanner, J. Lee, C. Ophus, K. C. Bustillo, M. B. Raschke, H. Ohldag, A. M. Minor, B. P. Rand, N. S. Ginsberg, Advanced Functional Materials, 33, 2207867, (2023).

10.1002/adfm.202207867

25

Observation of spin-momentum locked surface states in amorphous Bi2Se3

P. Corbae, S. Ciocys, D. Varjas, E. Kennedy, S. Zeltmann, M. Molina-Ruiz, S. M. Griffin, C. Jozwiak, Z. Chen, L. Wang, A. M. Minor, M. Scott, A. G. Grushin, A. Lanzara, F. Hellman, Nature Materials, 22, 200-206, (2023).

10.1038/s41563-022-01458-0

26

Optical reflectance imaging reveals interlayer coupling in mechanically stacked MoS2 and WS2 bilayers

V. Nguyen, W. Li, J. Ager, K. Xu, H. Taylor, Optics Express, 31, 3291, (2023).

10.1364/oe.473397

27

Deep-Learning Electron Diffractive Imaging

D. J. Chang, C. M. O’Leary, C. Su, D. A. Jacobs, S. Kahn, A. Zettl, J. Ciston, P. Ercius, J. Miao, Physical Review Letters, 130, 016101, (2023).

10.1103/physrevlett.130.016101

28

Exceeding the limits of algorithmic self-calibrated aberration recovery in Fourier ptychography

E. Li, S. Sherwin, G. Gunjala, L. Waller, Optics Continuum, 2, 119, (2023).

10.1364/optcon.475990

29

Discovery, structure, and function of filamentous 3-methylcrotonyl-CoA carboxylase

J. J. Hu, J. J. Lee, Y. Liu, C. Yu, L. Huang, I. Aphasizheva, R. Aphasizhev, Z. ng Zhou, Structure, 31, 100-110.e4, (2023).

10.1016/j.str.2022.11.015

30

CryoEM structures of anion exchanger 1 capture multiple states of inward- and outward-facing conformations

H. R. Zhekova, J. Jiang, W. Wang, K. Tsirulnikov, G. Kayık, H. Khan, R. Azimov, N. Abuladze, L. Kao, D. Newman, S. u. Noskov, D. er Tieleman, Z. Z. Hong Zhou, A. Pushkin, I. Kurtz, Communications Biology, 5, (2022).

10.1038/s42003-022-04306-8

31

Disentangling multiple scattering with deep learning: application to strain mapping from electron diffraction patterns

J. Munshi, A. Rakowski, B. H. Savitzky, S. E. Zeltmann, J. Ciston, M. Henderson, S. Cholia, A. M. Minor, M. Y. Chan, C. Ophus, npj Computational Materials, 8, (2022).

10.1038/s41524-022-00939-9

32

Visible-Light Azidation and Chemical Patterning of Graphene via Photoredox Catalysis

W. Li, Y. Li, B. Wang, K. Xu, The Journal of Physical Chemistry C, 126, 21281-21286, (2022).

10.1021/acs.jpcc.2c07399

33

Ultrafast electron diffraction: Visualizing dynamic states of matter

D. D. Filippetto, P. P. Musumeci, R. K. Li, B. J. Siwick, M. R. Otto, M. M. Centurion, J. F. Nunes, Reviews of Modern Physics, 94, 045004, (2022).

10.1103/revmodphys.94.045004

34

Robust and reliable actinic ptychographic imaging of highly periodic structures in EUV photomasks

B. Wang, N. Brooks, M. Tanksalvala, Y. Esashi, N. Jenkins, P. Johnsen, I. Binnie, G. Gui, Y. Shao, M. Murnane, H. Kapteyn, Photomask Technology 2022, 12293, 122930D, (2022).

10.1117/12.2641726

35

Accurate quantification of lattice temperature dynamics from ultrafast electron diffraction of single-crystal films using dynamical scattering simulations

D. B. Durham, C. Ophus, K. M. Siddiqui, A. M. Minor, D. Filippetto, Structural Dynamics, 9, 064302, (2022).

10.1063/4.0000170

36

A closer look at spin textures

J. Miao, M. M. Murnane, Nature Nanotechnology, (2022).

10.1038/s41565-022-01262-6

37

Zwitterions in 3D Perovskites: Organosulfide-Halide Perovskites

J. Li, Z. Chen, S. Saha, J. K. Utterback, M. L. Aubrey, R. Yuan, H. L. Weaver, N. S. Ginsberg, K. W. Chapman, M. R. Filip, H. I. Karunadasa, Journal of the American Chemical Society, 144, 22403-22408, (2022).

10.1021/jacs.2c09382

38

Structures and comparison of endogenous 2-oxoglutarate and pyruvate dehydrogenase complexes from bovine kidney

S. Liu, X. Xia, J. Zhen, Z. Li, Z. ng Zhou, Cell Discovery, 8, 126, (2022).

10.1038/s41421-022-00487-y

39

Is a complete Mueller matrix necessary in biomedical imaging?

T. Novikova, J. C. Ramella-Roman, Optics Letters, 47, 5549, (2022).

10.1364/ol.471239

40

Super-resolved time-frequency measurements of coupled phonon dynamics in a 2D quantum material

C. Gentry, C. Liao, W. You, S. A. Ryan, B. Varner, X. Shi, M. Guan, T. Gray, D. Temple, S. Meng, M. Raschke, K. Rossnagel, H. C. Kapteyn, M. M. Murnane, E. Cating-Subramanian, Scientific Reports, 12, 19734, (2022).

10.1038/s41598-022-22055-w

41

Nanoscale heterogeneity of ultrafast many-body carrier dynamics in triple cation perovskites

J. Nishida, P. S. Chang, J. Y. Ye, P. Sharma, D. M. Wharton, S. C. Johnson, S. E. Shaheen, M. B. Raschke, Nature Communications, 13, 6582, (2022).

10.1038/s41467-022-33935-0

42

Instructor perspectives on the emergency transition to remote instruction of physics labs

A. Werth, J. R. Hoehn, K. Oliver, M. J. Fox, H. J. Lewandowski, Physical Review Physics Education Research, 18, 020129, (2022).

10.1103/physrevphyseducres.18.020129

43

High-Resolution Conductivity Mapping with STEM EBIC

W. Hubbard, H. Chan, B. C. Regan, International Symposium for Testing and Failure Analysis, istfa2022p0251, 251-253, (2022).

10.31399/asm.cp.istfa2022p0251

44

Isotropic reconstruction for electron tomography with deep learning

Y. Liu, H. Zhang, H. Wang, C. Tao, G. Bi, Z. ng Zhou, Nature Communications, 13, 6482, (2022).

10.1038/s41467-022-33957-8

45

Assessing student engagement with teamwork in an online, large-enrollment course-based undergraduate research experience in physics

A. Werth, K. Oliver, C. G. West, H. J. Lewandowski, Physical Review Physics Education Research, 18, 020128, (2022).

10.1103/physrevphyseducres.18.020128

46

Atomic model of vesicular stomatitis virus and mechanism of assembly

K. Zhou, Z. Si, P. Ge, J. Tsao, M. Luo, Z. ng Zhou, Nature Communications, 13, 5980, (2022).

10.1038/s41467-022-33664-4

47

Homogeneous, Micron-Scale High-Energy-Density Matter Generated by Relativistic Laser-Solid Interactions

N. F. Beier, H. H. Allison, P. P. Efthimion, K. A. Flippo, L. L. Gao, S. B. Hansen, K. K. Hill, R. R. Hollinger, M. M. Logantha, Y. Y. Musthafa, R. R. Nedbailo, V. V. Senthilkumaran, R. R. Shepherd, V. N. Shlyaptsev, H. H. Song, S. S. Wang, F. F. Dollar, J. J. Rocca, A. E. Hussein, Physical Review Letters, 129, 135001, (2022).

10.1103/physrevlett.129.135001

48

Observation of formation and local structures of metal-organic layers via complementary electron microscopy techniques

X. Peng, P. M. Pelz, Q. Zhang, P. Chen, L. Cao, Y. Zhang, H. Liao, H. Zheng, C. Wang, S. Sun, M. C. Scott, Nature Communications, 13, 5197, (2022).

10.1038/s41467-022-32330-z

49

Structural and Elastic Properties of Empty-Pore Metalattices Extracted via Nondestructive Coherent Extreme UV Scatterometry and Electron Tomography

J. L. Knobloch, B. McBennett, C. S. Bevis, S. Yazdi, T. D. Frazer, A. Adak, E. E. Nelson, J. N. Hernández-Charpak, H. Y. Cheng, A. J. Grede, P. Mahale, N. Nova, N. C. Giebink, T. E. Mallouk, J. V. Badding, H. C. Kapteyn, B. Abad, M. M. Murnane, ACS Applied Materials & Interfaces, 14, 41316-41327, (2022).

10.1021/acsami.2c09360

50

Chemical Shift Detection with Energy Dispersive Spectroscopy (EDS)

R. Jin, B. Zutter, B. C. Regan, M. Mecklenburg, Microscopy and Microanalysis, 27, 2068-2069, (2021).

10.1017/s1431927621007480

STROBE Publications

2023