Publications

51

Computational microscopy with coherent diffractive imaging and ptychography

J. Miao, Nature, 637, 281-295, (2025).

10.1038/s41586-024-08278-z

52

Robust broadband ptychography algorithms for high-harmonic soft X-ray supercontinua

B. Shearer, H. Kapteyn, I. Binnie, N. W. Jenkins, M. Murnane, Optics Express, 33, 717, (2025).

10.1364/oe.541675

53

Perturbative Fourier ptychographic microscopy for fast quantitative phase imaging

M. Zach, K. Shen, R. Cao, M. Unser, L. Waller, J. Dong, Optics Express, 33, 38984, (2025).

10.1364/oe.560811

54

Dynamics and structure of the B2→B19’ phase transformation in NiTi revealed through in situ 4D-STEM

J. Donohue, S. H. Mills, B. H. Savitzky, S. E. Zeltmann, C. Ophus, A. M. Minor, Materials Science and Engineering: A, 926, 147951, (2025).

10.1016/j.msea.2025.147951

55

Multi-slice electron ptychographic tomography for three-dimensional phase-contrast microscopy beyond the depth of focus limits

A. Romanov, M. Cho, M. Scott, P. Pelz, Journal of Physics: Materials, 8, 015005, (2024).

10.1088/2515-7639/ad9ad2

56

Composition and in situ structure of the Methanospirillum hungatei cell envelope and surface layer

H. Wang, J. Zhang, S. Liao, A. M. Henstra, D. Leon, J. Erde, J. A. Loo, R. R. Ogorzalek Loo, Z. ng Zhou, R. P. Gunsalus, Science Advances, 10, eadr8596, (2024).

10.1126/sciadv.adr8596

57

Native DGC structure rationalizes muscular dystrophy-causing mutations

S. Liu, T. Su, X. Xia, Z. ng Zhou, Nature, 637, 1261-1271, (2024).

10.1038/s41586-024-08324-w

58

Single-shot ionization-based monitor for pulsed electron beams

P. P. Denham, A. A. Ody, P. P. Musumeci, N. N. Burger, N. N. Cook, G. G. Andonian, Physical Review Applied, 22, 064033, (2024).

10.1103/physrevapplied.22.064033

59

Molecular sociology of virus-induced cellular condensates supporting reovirus assembly and replication

X. Liu, X. Xia, M. W. Martynowycz, T. Gonen, Z. ng Zhou, Nature Communications, 15, 10638, (2024).

10.1038/s41467-024-54968-7

60

From Beam Damage to Massive Reaction Amplification under the Electron Microscope: An Ionization-Induced Chain Reaction in Crystals of a Dewar Benzene

K. A. Konieczny, I. Paul, J. A. Rodriguez, M. A. Garcia-Garibay, ACS Central Science, 10, 2346-2352, (2024).

10.1021/acscentsci.4c01429

61

Capturing intermediates and membrane remodeling in class III viral fusion

L. Milojević, Z. Si, X. Xia, L. Chen, Y. He, S. Tang, M. Luo, Z. ng Zhou, Science Advances, 10, eadn8579, (2024).

10.1126/sciadv.adn8579

62

Reversible Electron Beam Patterning of Colloidal Nanoparticles at Fluid Interfaces

J. G. Raybin, E. J. Dunsworth, V. Guo, N. S. Ginsberg, ACS Applied Materials & Interfaces, 16, 68611-68620, (2024).

10.1021/acsami.4c14882

63

Exploring Structural Anisotropy in Amorphous Tb-Co via Changes in Medium-Range Ordering

E. Kennedy, E. Hollingworth, A. Ceballos, D. O’Mahoney, C. Ophus, F. Hellman, M. Scott, Microscopy and Microanalysis, 31, ozae113, (2024).

10.1093/mam/ozae113

64

Computational microscopy beyond perfect lenses

X. Lu, M. Pham, E. Negrini, D. Davis, S. J. Osher, J. Miao, Physical Review E, 110, 054407, (2024).

10.1103/physreve.110.054407

65

Structure and identification of the native PLP synthase complex from Methanosarcina acetivorans lysate

A. Agnew, E. Humm, K. Zhou, R. P. Gunsalus, Z. ng Zhou, mBio, 16, e03090-24, (2025).

10.1128/mbio.03090-24

66

Tabletop deep-ultraviolet transient grating for ultrafast nanoscale carrier-transport measurements in ultrawide-band-gap materials

E. E. Nelson, B. McBennett, T. H. Culman, A. Beardo, H. C. Kapteyn, M. H. Frey, M. R. Atkinson, M. M. Murnane, J. L. Knobloch, Physical Review Applied, 22, 054007, (2024).

10.1103/physrevapplied.22.054007

67

Real-time optical thickness determination for producing ultra-thin silicon membranes using anisotropic potassium hydroxide etching

L. Gislason, S. Genc, S. Thompson, J. Crawford, J. Jessing, MRS Advances, (2024).

10.1557/s43580-024-00945-7

68

Aberration correction in epi-fluorescence microscopy using unknown speckle illumination

E. Premillieu, A. M. Caravaca-Aguirre, S. Labouesse, K. Irsch, R. Piestun, Optics Express, 32, 37658, (2024).

10.1364/oe.526148

69

Elucidating the role of Cr migration in Ni-Cr exposed to molten FLiNaK via multiscale characterization

S. H. Mills, R. D. Hayes, N. Bieberdorf, S. E. Zeltmann, A. M. Kennedy, L. Capolungo, M. Asta, R. O. Scarlat, A. M. Minor, Acta Materialia, 279, 120206, (2024).

10.1016/j.actamat.2024.120206

70

The hierarchical structure of organic mixed ionic–electronic conductors and its evolution in water

Y. Tsarfati, K. C. Bustillo, B. H. Savitzky, L. Balhorn, T. J. Quill, A. Marks, J. Donohue, S. E. Zeltmann, C. J. Takacs, A. Giovannitti, I. McCulloch, C. Ophus, A. M. Minor, A. Salleo, Nature Materials, (2024).

10.1038/s41563-024-02016-6

71

Neural space–time model for dynamic multi-shot imaging

R. Cao, N. S. Divekar, J. K. Nuñez, S. Upadhyayula, L. Waller, Nature Methods, (2024).

10.1038/s41592-024-02417-0

72

Multi-Modal Extreme-Ultraviolet Reflectometer: Solving Inverse Problems in Nanoscale Metrology

Y. Shao, N. W. Jenkins, C. Klein, Y. Li, Y. Esashi, M. Tanksalvala, M. M. Murnane, H. C. Kapteyn, Frontiers in Optics + Laser Science 2024 (FiO, LS), FTu1B.3, FTu1B.3, (2024).

10.1364/fio.2024.ftu1b.3

73

Extreme Ultraviolet Scatterometry for Characterizing Nanometer Scale Features in a Damascene Sample

C. C. Klein, N. N. Jenkins, Y. Y. Shao, Y. Y. Li, S. S. Park, W. W. Kim, H. H. Kapteyn, M. M. Murnane, Frontiers in Optics + Laser Science 2024 (FiO, LS), FTu1B.2, FTu1B.2, (2024).

10.1364/fio.2024.ftu1b.2

74

Architectural organization and in situ fusion protein structure of lymphocytic choriomeningitis virus

J. S. Kang, K. Zhou, H. Wang, S. Tang, K. Lyles, M. Luo, Z. ng Zhou, Journal of Virology, 98, (2024).

10.1128/jvi.00640-24

75

Space-time reconstruction for lensless imaging using implicit neural representations

T. Chien, R. Cao, F. Liu, L. A. Kabuli, L. Waller, Optics Express, 32, 35725, (2024).

10.1364/oe.530480

76

Low-density diamondlike amorphous carbon at nanostructured metal-diamond interfaces

B. McBennett, Y. Esashi, N. W. Jenkins, A. Beardo, Y. Shao, E. E. Nelson, T. H. Culman, B. Abad, M. Tanksalvala, T. D. Frazer, S. Marks, W. Chao, S. Yazdi, J. L. Knobloch, H. C. Kapteyn, M. M. Murnane, Physical Review Materials, 8, 096001, (2024).

10.1103/physrevmaterials.8.096001

77

Exploring student beliefs of traditional physics laboratory coursework in relation to authentic research

M. Kretchmer, R. L. Merritt, H. J. Lewandowski, 2024 Physics Education Research Conference Proceedings, 230-236, (2024).

10.1119/perc.2024.pr.kretchmer

78

Structural Heterogeneity of the Rabies Virus Virion

X. Cai, K. Zhou, A. Alvarez-Cabrera, Z. Si, H. Wang, Y. He, C. Li, Z. Hong Zhou, Viruses, 16, 1447, (2024).

10.3390/v16091447

79

Low-Light Phase Retrieval With Implicit Generative Priors

R. Manekar, E. Negrini, M. Pham, D. Jacobs, J. Srivastava, S. J. Osher, J. Miao, IEEE Transactions on Image Processing, 33, 4728-4737, (2024).

10.1109/tip.2024.3445739

80

Atomic structures of a bacteriocin targeting Gram-positive bacteria

X. Cai, Y. He, I. Yu, A. Imani, D. Scholl, J. F. Miller, Z. Hong Zhou, Nature Communications, 15, 7057, (2024).

10.1038/s41467-024-51038-w

81

Quantitative Assessment of Collagen Remodeling during a Murine Pregnancy

J. C. Ramella-Roman, M. Mahendroo, C. Raoux, G. Latour, M. Schanne-Klein, ACS Photonics, 4c00337, (2024).

10.1021/acsphotonics.4c00337

82

Mapping Ferroelectric Fields Reveals the Origins of the Coercivity Distribution

H. Chan, S. S. Fields, Y. Chen, T. P. O’Neill, M. K. Lenox, W. A. Hubbard, J. F. Ihlefeld, B. C. Regan, ACS Nano, (2024).

10.1021/acsnano.4c04526

83

Tip-Enhanced Imaging and Control of Infrared Strong Light-Matter Interaction

Y. Wang, S. C. Johnson, N. Nookala, J. F. Klem, S. R. Turner, R. L. Puro, M. Hu, I. Brener, E. A. Muller, A. Belyanin, M. A. Belkin, M. B. Raschke, Laser & Photonics Reviews, 2301148, (2024).

10.1002/lpor.202301148

84

Three-dimensional structure of buried heterointerfaces revealed by multislice ptychography

C. M. O’Leary, H. Sha, J. Zhang, C. Su, S. Kahn, H. Jiang, A. Zettl, J. Ciston, J. Miao, Physical Review Applied, 22, 014016, (2024).

10.1103/physrevapplied.22.014016

85

Detecting Chemical Shifts with Energy Dispersive Spectroscopy

Y. Chen, R. Jin, Y. Heffes, B. Zutter, T. O’Neill, J. Lodico, B. Regan, M. Mecklenburg, Microscopy and Microanalysis, 30, ozae044.143, (2024).

10.1093/mam/ozae044.143

86

MicroED-Informed 4D-STEM of MOFs for Carbon Capture

S. Karstens, M. Dods, A. Saha, K. Bustillo, P. Ercius, J. Long, A. Minor, Microscopy and Microanalysis, 30, ozae044.922, (2024).

10.1093/mam/ozae044.922

87

Nano-PUND and STEM EBIC Imaging for Ferroelectric Polarization Mapping

H. Chan, Y. Chen, T. O’Neill, S. Fields, M. Lenox, J. Ihlefeld, W. Hubbard, B. Regan, Microscopy and Microanalysis, 30, ozae044.074, (2024).

10.1093/mam/ozae044.074

88

Atomic Electron Tomography of Thin Films

A. Bhalla-Levine, K. Park, J. Park, P. Ercius, J. Miao, Microscopy and Microanalysis, 30, ozae044.888, (2024).

10.1093/mam/ozae044.888

89

Understanding Ferroelectric Polarization in Hafnium Zirconium Oxide

B. Regan, Y. Chen, T. O’Neill, S. Fields, M. Lenox, J. Ihlefeld, W. Hubbard, H. Chan, Microscopy and Microanalysis, 30, ozae044.679, (2024).

10.1093/mam/ozae044.679

90

Mapping Moiré Potentials with STEM EBIC Imaging

T. O’Neill, E. Elias, Y. Chen, H. Chan, Q. Shi, B. Regan, Microscopy and Microanalysis, 30, ozae044.774, (2024).

10.1093/mam/ozae044.774

91

Time-efficient filtering of imaging polarimetric data by checking physical realizability of experimental Mueller matrices

T. Novikova, A. Ovchinnikov, G. Pogudin, J. Ramella-Roman, Bioinformatics, 40, btae348, (2024).

10.1093/bioinformatics/btae348

92

Reduced-Dimensionality Al Nanocrystals: Nanowires, Nanobars, and Nanomoustaches

D. Solti, C. R. Jacobson, J. on Yates, B. Hammel, G. Naidu, C. E. Arndt, A. Bayles, Y. Yuan, P. Dhindsa, J. T. Luu, C. Farr, G. Wu, H. O. Everitt, A. Tsai, S. Yazdi, P. Nordlander, N. J. Halas, Nano Letters, 24, 6897-6905, (2024).

10.1021/acs.nanolett.4c00895

93

Multi-Modal Extreme-Ultraviolet Reflectometer: Solving Inverse Problems in Nanostructure Metrology

Y. Shao, N. W. Jenkins, C. Klein, Y. Li, Y. Esashi, M. M. Murnane, H. C. Kapteyn, M. Tanksalvala, 2024 IEEE Conference on Computational Imaging Using Synthetic Apertures (CISA), 1-5, (2024).

10.1109/cisa60639.2024.10576406

94

Anion and Cation Migration at 2D/3D Halide Perovskite Interfaces

R. F. Moral, C. R. Perini, T. Kodalle, A. Kim, F. Babbe, N. Harada, J. Hajhemati, P. Schulz, N. S. Ginsberg, S. Aloni, C. P. Schwartz, J. Correa-Baena, C. M. Sutter-Fella, ACS Energy Letters, 9, 2703-2716, (2024).

10.1021/acsenergylett.4c00728

95

High-harmonic spin-shearing interferometry for spatially resolved EUV magneto-optical spectroscopy

N. J. Brooks, K. M. Dorney, J. Ellis, A. E. Denton, C. Gentry, S. A. Ryan, Q. D. Nguyen, D. W. Morrill, H. C. Kapteyn, M. M. Murnane, Optics Express, 32, 19076, (2024).

10.1364/oe.521669

96

Long-Chain Lipids Facilitate Insertion of Large Nanoparticles into Membranes of Small Unilamellar Vesicles

A. Marzouq, L. Morgenstein, C. A. Huang-Zhu, S. Yudovich, A. Atkins, A. Grupi, R. C. Van Lehn, S. Weiss, Langmuir, 40, 10477-10485, (2024).

10.1021/acs.langmuir.3c03471

97

Structure-guided mutagenesis targeting interactions between pp150 tegument protein and small capsid protein identify five lethal and two live-attenuated HCMV mutants

A. Stevens, R. Cruz-Cosme, N. Armstrong, Q. Tang, Z. Hong Zhou, Virology, 596, 110115, (2024).

10.1016/j.virol.2024.110115

98

Real space iterative reconstruction for vector tomography (RESIRE-V)

M. Pham, X. Lu, A. Rana, S. Osher, J. Miao, Scientific Reports, 14, 9541, (2024).

10.1038/s41598-024-59140-1

99

EUV scatterometry: low-dose characterization of polymer-based metamaterials

N. W. Jenkins, Y. Esashi, Y. Shao, M. Tanksalvala, H. C. Kapteyn, M. M. Murnane, M. Atkinson, Metrology, Inspection, and Process Control XXXVIII, 12955, 37, (2024).

10.1117/12.3009911

100

RNA genome packaging and capsid assembly of virus visualized in host cells

X. Xia, P. Sung, M. W. Martynowycz, T. Gonen, P. Roy, Z. Hong Zhou, Cell, 187, 2236-2249.e17, (2024).

10.1016/j.cell.2024.03.007

STROBE Publications

2025