Publications

451

Physics-based Learned Design: Optimized Coded-Illumination for Quantitative Phase Imaging

M. R. Kellman, E. Bostan, N. A. Repina, L. Waller, IEEE Transactions on Computational Imaging, 344-353, (2019).

10.1109/tci.2019.2905434

452

Optical phantoms for biomedical polarimetry: a review

J. Chue-Sang, M. Gonzalez, A. Pierre, M. Laughrey, I. Saytashev, T. Novikova, J. C. Ramella-Roman, Journal of Biomedical Optics, 24, 1, (2019).

10.1117/1.jbo.24.3.030901

453

Homochiral and racemic MicroED structures of a peptide repeat from the ice-nucleation protein InaZ

C. Zee, C. Glynn, M. Gallagher-Jones, J. Miao, C. G. Santiago, D. Cascio, T. Gonen, M. R. Sawaya, J. A. Rodriguez, IUCrJ, 6, 197-205, (2019).

10.1107/s2052252518017621

454

Excitation and Emission Transition Dipoles of Type-II Semiconductor Nanorods

S. Ghosh, A. M. Chizhik, G. Yang, N. Karedla, I. Gregor, D. Oron, S. Weiss, J. Enderlein, A. I. Chizhik, Nano Letters, 19, 1695-1700, (2019).

10.1021/acs.nanolett.8b04695

455

Atomic structures and deletion mutant reveal different capsid-binding patterns and functional significance of tegument protein pp150 in murine and human cytomegaloviruses with implications for therapeutic development

W. Liu, X. Dai, J. Jih, K. Chan, P. Trang, X. Yu, R. Balogun, Y. Mei, F. Liu, Z. Hong Zhou, PLOS Pathogens, 15, e1007615, (2019).

10.1371/journal.ppat.1007615

456

Atomic structure of the translation regulatory protein NS1 of bluetongue virus

A. Kerviel, P. Ge, M. Lai, J. Jih, M. Boyce, X. Zhang, Z. Hong Zhou, P. Roy, Nature Microbiology, 4, 837-845, (2019).

10.1038/s41564-019-0369-x

457

Two-photon PSF-engineered image scanning microscopy

O. Tzang, D. Feldkhun, A. Agrawal, A. Jesacher, R. Piestun, Optics Letters, 44, 895, (2019).

10.1364/ol.44.000895

458

Engineering Nanoscale Thermal Transport: Size- and Spacing-Dependent Cooling of Nanostructures

T. D. Frazer, J. L. Knobloch, K. M. Hoogeboom-Pot, D. Nardi, W. Chao, R. W. Falcone, M. M. Murnane, H. C. Kapteyn, J. N. Hernandez-Charpak, Physical Review Applied, 11, 024042, (2019).

10.1103/physrevapplied.11.024042

459

Focusability of laser pulses at petawatt transport intensities in thin-film compression

D. M. Farinella, J. J. Wheeler, A. E. Hussein, J. J. Nees, M. M. Stanfield, N. N. Beier, Y. Y. Ma, G. G. Cojocaru, R. R. Ungureanu, M. M. Pittman, J. J. Demailly, E. E. Baynard, R. R. Fabbri, M. M. Masruri, R. R. Secareanu, A. A. Naziru, R. R. Dabu, A. A. Maksimchuk, K. K. Krushelnick, D. D. Ros, G. G. Mourou, T. T. Tajima, F. F. Dollar, Journal of the Optical Society of America B, 36, A28, (2018).

10.1364/josab.36.000a28

460

Temporal magnification for streaked ultrafast electron diffraction and microscopy

D. D. Cesar, P. P. Musumeci, Ultramicroscopy, 199, 1-6, (2019).

10.1016/j.ultramic.2019.01.003

461

Generalized proximal smoothing (GPS) for phase retrieval

M. Pham, P. Yin, A. Rana, S. Osher, J. Miao, Optics Express, 17, 2792-2808, (2019).

10.1364/oe.27.002792

462

Nanoscale mosaicity revealed in peptide microcrystals by scanning electron nanodiffraction

M. Gallagher-Jones, C. Ophus, K. C. Bustillo, D. R. Boyer, O. Panova, C. Glynn, C. Zee, J. Ciston, K. Mancia, A. M. Minor, J. A. Rodriguez, Communications Biology, 2, 26, (2019).

10.1038/s42003-018-0263-8

463

Focusing and scanning through scattering media in microseconds

D. Feldkhun, O. Tzang, K. H. Wagner, R. Piestun, Optica, 6, 72, (2019).

10.1364/optica.6.000072

464

Blended coarse gradient descent for full quantization of deep neural networks

P. Yin, S. Zhang, J. Lyu, S. Osher, Y. Qi, J. Xin, Research in the Mathematical Sciences, 6, 14, (2019).

10.1007/s40687-018-0177-6

465

Atomic structures of enterovirus D68 in complex with two monoclonal antibodies define distinct mechanisms of viral neutralization

Q. Zheng, R. Zhu, L. Xu, M. He, X. Yan, D. Liu, Z. Yin, Y. Wu, Y. Li, L. Yang, W. Hou, S. Li, Z. Li, Z. Chen, Z. Li, H. Yu, Y. Gu, J. Zhang, T. S. Baker, Z. Hong Zhou, B. S. Graham, T. Cheng, S. Li, N. Xia, Nature Microbiology, 4, 124-133, (2018).

10.1038/s41564-018-0275-7

466

Ptychographic amplitude and phase reconstruction of bichromatic vortex beams

Y. Esashi, C. T. Liao, B. Wang, N. Brooks, K. M. Dorney, C. Hernández-García, H. Kapteyn, D. Adams, M. Murnane, Optics Express, 26, 34007, (2018).

10.1364/oe.26.034007

467

Quantitative differential phase contrast (DPC) microscopy with computational aberration correction

M. Chen, Z. F. Phillips, L. Waller, Optics Express, 26, 32888-32899, (2018).

10.1364/oe.26.032888

468

Different functional states of fusion protein gB revealed on human cytomegalovirus by cryo electron tomography with Volta phase plate

Z. Si, J. Zhang, S. Shivakoti, I. Atanasov, C. Tao, W. H. Hui, K. Zhou, X. Yu, W. Li, M. Luo, G. Bi, Z. Hong Zhou, PLOS Pathogens, 14, e1007452, (2018).

10.1371/journal.ppat.1007452

469

Atomic-Scale Structure and Stress Release Mechanism in Core–Shell Nanoparticles

M. Nathanson, K. Kanhaiya, A. Pryor, J. Miao, H. Heinz, ACS Nano, 12, 12296 - 12304, (2018).

10.1021/acsnano.8b06118

470

Correlative 3D x-ray fluorescence and ptychographic tomography of frozen-hydrated green algae

J. Deng, Y. Lo, M. Gallagher-Jones, S. Chen, A. Pryor, Q. Jin, Y. Hong, Y. G. Nashed, S. Vogt, J. Miao, C. Jacobsen, Science Advances, 4, eaau4548, (2018).

10.1126/sciadv.aau4548

471

STEM Imaging with Beam-Induced Hole and Secondary Electron Currents

W. A. Hubbard, M. Mecklenburg, H. Chan, B. C. Regan, Physical Review Applied, 10, (2018).

10.1103/physrevapplied.10.044066

472

Full-field imaging of thermal and acoustic dynamics in an individual nanostructure using tabletop high harmonic beams

R. M. Karl, G. F. Mancini, J. L. Knobloch, T. D. Frazer, J. N. Hernandez-Charpak, B. Abad, D. F. Gardner, E. R. Shanblatt, M. Tanksalvala, C. L. Porter, C. S. Bevis, D. E. Adams, H. C. Kapteyn, M. M. Murnane, Science Advances, 4, eaau4295, (2018).

10.1126/sciadv.aau4295

473

Characterizing the Quantum-Confined Stark Effect in Semiconductor Quantum Dots and Nanorods for Single-Molecule Electrophysiology

Y. Kuo, J. Li, X. Michalet, A. Chizhik, N. Meir, O. Bar-Elli, E. Chan, D. Oron, J. Enderlein, S. Weiss, ACS Photonics, 5, 4788-4800, (2018).

10.1021/acsphotonics.8b00617

474

Motion-resolved quantitative phase imaging

M. Kellman, M. Chen, Z. F. Phillips, M. Lustig, L. Waller, Biomedical Optics Express, 9, 5456, (2018).

10.1364/boe.9.005456

475

Structural insights on TRPV5 gating by endogenous modulators

T. T. Hughes, R. A. Pumroy, A. Yazici, M. A. Kasimova, E. C. Fluck, K. W. Huynh, A. Samanta, S. K. Molugu, Z. Hong Zhou, V. Carnevale, T. Rohacs, V. Y. Moiseenkova-Bell, Nature Communications, 9, 4198, (2018).

10.1038/s41467-018-06753-6

476

Dynamic 2D implementation of 3D diffractive optics

H. Wang, R. Piestun, Optica, 5, 1220, (2018).

10.1364/optica.5.001220

477

High-coherence relativistic electron probes for ultrafast structural dynamics

P. Musumeci, B. B. Griffin, D. Filippetto, F. Ji, A. Minor, F. Riminucci, D. B. Durham, X. Wang, M. Centurion, D. Slaughter, Ultrafast Nonlinear Imaging and Spectroscopy VI, 1, 1, (2018).

10.1117/12.2321323

478

Discovery and structural characterization of a therapeutic antibody against coxsackievirus A10

R. Zhu, L. Xu, Q. Zheng, Y. Cui, S. Li, M. He, Z. Yin, D. Liu, S. Li, Z. Li, Z. Chen, H. Yu, Y. Que, C. Liu, Z. Kong, J. Zhang, T. S. Baker, X. Yan, Z. Hong Zhou, T. Cheng, N. Xia, Science Advances, 4, eaat7459, (2018).

10.1126/sciadv.aat7459

479

Synergizing superresolution optical fluctuation imaging with single molecule localization microscopy

S. Schidorsky, X. Yi, Y. Razvag, J. Sajman, K. Hermon, S. Weiss, E. Sherman, Methods and Applications in Fluorescence, 6, 045008, (2018).

10.1088/2050-6120/aadc2b

480

Electron Ghost Imaging

S. S. Li, F. F. Cropp, K. K. Kabra, T. J. Lane, G. G. Wetzstein, P. P. Musumeci, D. D. Ratner, Physical Review Letters, 121, 114801, (2018).

10.1103/physrevlett.121.114801

481

Malaria parasite translocon structure and mechanism of effector export

C. Ho, J. R. Beck, M. Lai, Y. Cui, D. E. Goldberg, P. F. Egea, Z. Hong Zhou, Nature, 561, 70 - 75, (2018).

10.1038/s41586-018-0469-4

482

Cryo-EM of full-length α-synuclein reveals fibril polymorphs with a common structural kernel

B. Li, P. Ge, K. A. Murray, P. Sheth, M. Zhang, G. Nair, M. R. Sawaya, W. Shin, D. R. Boyer, S. Ye, D. S. Eisenberg, Z. Hong Zhou, L. Jiang, Nature Communications, 9, 3609, (2018).

10.1038/s41467-018-05971-2

483

Phase-transition–induced p-n junction in single halide perovskite nanowire

Q. Kong, W. Lee, M. Lai, C. G. Bischak, G. Gao, A. B. Wong, T. Lei, Y. Yu, L. Wang, N. S. Ginsberg, P. Yang, Proceedings of the National Academy of Sciences, 115, 8889-8894, (2018).

10.1073/pnas.1806515115

484

Cryo-EM structure of the human α5β3 GABAA receptor

S. Liu, L. Xu, F. Guan, Y. Liu, Y. Cui, Q. Zhang, X. Zheng, G. Bi, Z. Hong Zhou, X. Zhang, S. Ye, Cell Research, 28, 958-961, (2018).

10.1038/s41422-018-0077-8

485

Building atomic models based on near atomic resolution cryoEM maps with existing tools

I. Yu, L. Nguyen, J. Avaylon, K. Wang, M. Lai, Z. Hong Zhou, Journal of Structural Biology, 204, 313-318, (2018).

10.1016/j.jsb.2018.08.004

486

Dataflow at the COSMIC Beamline – Stream Processing and Supercomputing

B. Enders, K. Nowrouzi, H. Krishnan, S. Marchesini, J. Park, Y. Yu, D. A. Shapiro, Microscopy and Microanalysis, 24, 58-59, (2018).

10.1017/s1431927618012710

487

Nanoscale Visualization of Magnetic Contrasts with Soft X-ray Spectro-Ptychography at the Advanced Light Source

Y. Yu, R. Celestre, B. Enders, K. Nowrouzi, H. Padmore, T. Warwick, J. Jeong, D. A. Shapiro, Microscopy and Microanalysis, 24, 530-531, (2018).

10.1017/s143192761801485x

488

The COSMIC Imaging Beamline at the Advanced Light Source: a new facility for spectro-microscopy of nano-materials

D. A. Shapiro, R. Celestre, B. Enders, J. Joseph, H. Krishnan, M. A. Marcus, K. Nowrouzi, H. Padmore, J. Park, A. Warwick, Y. Yu, Microscopy and Microanalysis, 24, 8-11, (2018).

10.1017/s1431927618012485

489

Nanoimaging and Control of Molecular Vibrations through Electromagnetically Induced Scattering Reaching the Strong Coupling Regime

E. A. Muller, B. Pollard, H. A. Bechtel, R. Adato, D. Etezadi, H. Altug, M. B. Raschke, ACS Photonics, 5, 3594-3600, (2018).

10.1021/acsphotonics.8b00425

490

Electromigration of Copper in Lithographically-Defined Aluminum Nanowires

B. Zutter, M. Mecklenburg, S. Aloni, B. C. Regan, Microscopy and Microanalysis, 24, 2190-2191, (2018).

10.1017/s1431927618011431

491

Aberration recovery by imaging a weak diffuser

G. Gunjala, S. Sherwin, A. Shanker, L. Waller, Optics Express, 26, 21054, (2018).

10.1364/oe.26.021054

492

Scanning TEM EBIC Imaging of Resistive Memory Switching Processes

B. C. Regan, J. Lodico, W. A. Hubbard, Microscopy and Microanalysis, 24, 1806-1807, (2018).

10.1017/s1431927618009510

493

In Situ Structures of the Polymerase Complex and RNA Genome Show How Aquareovirus Transcription Machineries Respond to Uncoating

K. Ding, L. Nguyen, Z. Hong Zhou, Journal of Virology, 92, e00774-18, (2018).

10.1128/jvi.00774-18

494

Scanning TEM Electron Beam Induced Current Imaging in Water

J. J. Lodico, W. A. Hubbard, B. C. Regan, Microscopy and Microanalysis, 24, 252-253, (2018).

10.1017/s1431927618001757

495

Block Matching Local SVD Operator Based Sparsity and TV Regularization for Image Denoising

J. Liu, S. Osher, Journal of Scientific Computing, 78, 607-624, (2018).

10.1007/s10915-018-0785-8

496

Tunable Polaron Distortions Control the Extent of Halide Demixing in Lead Halide Perovskites

C. G. Bischak, A. B. Wong, E. Lin, D. T. Limmer, P. Yang, N. S. Ginsberg, The Journal of Physical Chemistry Letters, 9, 3998-4005, (2018).

10.1021/acs.jpclett.8b01512

497

Quantitative characterization of high temperature oxidation using electron tomography and energy-dispersive X-ray spectroscopy

J. Zhou, M. Taylor, G. A. Melinte, A. J. Shahani, C. C. Dharmawardhana, H. Heinz, P. W. Voorhees, J. H. Perepezko, K. Bustillo, P. Ercius, J. Miao, Scientific Reports, 8, 10239, (2018).

10.1038/s41598-018-28348-3

498

Super-Resolution Imaging of Clickable Graphene Nanoribbons Decorated with Fluorescent Dyes

D. Joshi, M. Hauser, G. Veber, A. Berl, K. Xu, F. R. Fischer, Journal of the American Chemical Society, 140, 9574-9580, (2018).

10.1021/jacs.8b04679

499

Compressed sensing FTIR nano-spectroscopy and nano-imaging

B. Kästner, F. Schmähling, A. Hornemann, G. Ulrich, A. Hoehl, M. Kruskopf, K. Pierz, M. B. Raschke, G. Wübbeler, C. Elster, Optics Express, 26, 18115, (2018).

10.1364/oe.26.018115

500

Simultaneous second harmonic generation and Mueller Matrix polarimetry imaging of the rat cornea

I. Saytashev, N. Lopez, J. Chue-Sang, J. Ramella-Roman, Investigative Ophthalmology & Visual Science , 59, 5844, (2018).

STROBE Publications

2019