Publications

501

Understanding Chemical Bonding in Alloys and the Representation in Atomistic Simulations

J. Liu, E. Tennessen, J. Miao, Y. Huang, J. M. Rondinelli, H. Heinz, The Journal of Physical Chemistry C, 122, 14996-15009, (2018).

10.1021/acs.jpcc.8b01891

502

Single-shot 3D coherent diffractive imaging of core-shell nanoparticles with elemental specificity

A. Pryor, A. Rana, R. Xu, J. A. Rodriguez, Y. Yang, M. Gallagher-Jones, H. Jiang, K. Kanhaiya, M. Nathanson, J. Park, S. Kim, S. Kim, D. Nam, Y. Yue, J. Fan, Z. Sun, B. Zhang, D. F. Gardner, C. Dias, Y. Joti, T. Hatsui, T. Kameshima, Y. Inubushi, K. Tono, J. Lee, M. Yabashi, C. Song, T. Ishikawa, H. C. Kapteyn, M. M. Murnane, H. Heinz, J. Miao, Scientific Reports, 8, 8284, (2018).

10.1038/s41598-018-26182-1

503

Structure of Telomerase with Telomeric DNA

J. Jiang, Y. Wang, L. Sušac, H. Chan, R. Basu, Z. Hong Zhou, J. Feigon, Cell, 173, 1179-1190.e13, (2018).

10.1016/j.cell.2018.04.038

504

Far Infrared Synchrotron Near-Field Nanoimaging and Nanospectroscopy

O. Khatib, H. A. Bechtel, M. C. Martin, M. B. Raschke, G. ce Carr, ACS Photonics, 5, 2773-2779, (2018).

10.1021/acsphotonics.8b00565

505

In situ coherent diffractive imaging

Y. Lo, L. Zhao, M. Gallagher-Jones, A. Rana, J. J. Lodico, W. Xiao, B. C. Regan, J. Miao, Nature Communications, 9, (2018).

10.1038/s41467-018-04259-9

506

Electron microscope based setup for single-shot 4D trace space reconstruction of bright electron beams

J. Giner Navarro, R. Aßmann, D. Cesar, B. Marchetti, D. Marx, P. Musumeci, Proceedings of the 9th International Particle Accelerator Conference, (2018).

10.18429/JACOW-IPAC2018-THPML106

507

Analysis of Global and Site-Specific Radiation Damage in Cryo-EM

J. Hattne, D. Shi, C. Glynn, C. Zee, M. Gallagher-Jones, M. W. Martynowycz, J. A. Rodriguez, T. Gonen, Structure, 26, 759-766.e4, (2018).

10.1016/j.str.2018.03.021

508

Students’ flexible use of ontologies and the value of tentative reasoning: Examples of conceptual understanding in three canonical topics of quantum mechanics

J. R. Hoehn, N. D. Finkelstein, Physical Review Physics Education Research, 14, 010122, (2018).

10.1103/physrevphyseducres.14.010122

509

Structure of the herpes simplex virus 1 capsid with associated tegument protein complexes

X. Dai, Z. Hong Zhou, Science, 360, eaao7298, (2018).

10.1126/science.aao7298

510

Atomic Structure of the E2 Inner Core of Human Pyruvate Dehydrogenase Complex

J. Jiang, F. L. Baiesc, Y. Hiromasa, X. Yu, W. Hui, X. Dai, T. E. Roche, Z. Hong Zhou, Biochemistry, 57, 2325-2334, (2018).

10.1021/acs.biochem.8b00357

511

Sub-wavelength Resolution, Wide Field-Of-View, and Quantitative 13nm Imaging in Reflection and Transmission with a Tabletop High Harmonic Source

C. Porter, M. Tanksalvala, D. Gardner, G. Mancini, M. Gerrity, G. Miley, X. Zhang, N. Horiguchi, E. Shanblatt, B. Galloway, Y. Esashi, C. Bevis, R. Karl, P. Johnson, D. Adams, H. Kapteyn, M. Murnane, High-Brightness Sources and Light-driven Interactions, (2018).

10.1364/euvxray.2018.et2b.2

512

Characterization and imaging of nanostructured materials using tabletop extreme ultraviolet light sources

R. Karl, G. F. Mancini, J. Knobloch, T. Frazer, J. N. Hernandez-Charpak, B. Abad Mayor, M. Tanksalvala, C. L. Porter, C. S. Bevis, W. Chao, D. E. Adams, H. C. Kapteyn, M. Murnane, Metrology, Inspection, and Process Control for Microlithography XXXII, (2018).

10.1117/12.2297223

513

Complex EUV imaging reflectometry: spatially resolved 3D composition determination and dopant profiling with a tabletop 13nm source

R. Karl, P. Johnsen, D. E. Adams, H. C. Kapteyn, M. M. Murnane, N. Horiguchi, C. L. Porter, M. Tanksalvala, M. Gerrity, G. P. Miley, X. Zhang, C. S. Bevis, Y. Esashi, Metrology, Inspection, and Process Control for Microlithography XXXII, (2018).

10.1117/12.2297464

514

Multi-model imaging of the interaction of nanomaterials with cells

J. Miao, IUCrJ, 5, 122-123, (2018).

10.1107/s2052252518003548

515

Multiphoton microscopy of ECM proteins in baboon aortic leaflet

M. Gonzalez, I. Saytashev, B. Gonzalez, A. Pinero, M. Perez, S. Ramaswamy, J. C. Ramella-Roman, C. Luna, Diagnostic and Therapeutic Applications of Light in Cardiology 2018, (2018).

10.1117/12.2291024

516

Spectrally Resolved and Functional Super-resolution Microscopy via Ultrahigh-Throughput Single-Molecule Spectroscopy

R. Yan, S. Moon, S. J. Kenny, K. Xu, Accounts of Chemical Research, 51, 697-705, (2018).

10.1021/acs.accounts.7b00545

517

Long-Lived Correlated Triplet Pairs in a π-Stacked Crystalline Pentacene Derivative

B. D. Folie, J. B. Haber, S. Refaely-Abramson, J. B. Neaton, N. S. Ginsberg, Journal of the American Chemical Society, 140, 2326-2335, (2018).

10.1021/jacs.7b12662

518

Sub-ångström cryo-EM structure of a prion protofibril reveals a polar clasp

M. Gallagher-Jones, C. Glynn, D. R. Boyer, M. W. Martynowycz, E. Hernandez, J. Miao, C. Zee, I. V. Novikova, L. Goldschmidt, H. T. McFarlane, G. F. Helguera, J. E. Evans, M. R. Sawaya, D. Cascio, D. S. Eisenberg, T. Gonen, J. A. Rodriguez, Nature Structural & Molecular Biology, 25, 131-134, (2018).

10.1038/s41594-017-0018-0

519

Intercalation events visualized in single microcrystals of graphite

E. R. White, J. J. Lodico, B. C. Regan, Nature Communications, 1969, (2017).

10.1038/s41467-017-01787-8

520

Membrane insertion of—and membrane potential sensing by—semiconductor voltage nanosensors: Feasibility demonstration

K. Park, Y. Kuo, V. Shvadchak, A. Ingargiola, X. Dai, L. Hsiung, W. Kim, H. Zhou, P. Zou, A. J. Levine, J. Li, S. Weiss, Science Advances, 4, e1601453, (2018).

10.1126/sciadv.1601453

521

Nanoimaging of Electronic Heterogeneity in Bi2Se3 and Sb2Te3 Nanocrystals

X. Lu, O. Khatib, X. Du, J. Duan, W. Wei, X. Liu, H. A. Bechtel, F. D'Apuzzo, M. Yan, A. Buyanin, Q. Fu, J. Chen, M. Salmeron, J. Zeng, M. B. Raschke, P. Jiang, X. Bao, Advanced Electronic Materials, 4, 1700377, (2017).

10.1002/aelm.201700377

522

Thermometry of Silicon Nanoparticles

M. Mecklenburg, B. Zutter, B. C. Regan, Physical Review Applied, 9, 014005, (2018).

10.1103/physrevapplied.9.014005

523

Structure and mutagenesis reveal essential capsid protein interactions for KSHV replication

X. Dai, D. Gong, H. Lim, J. Jih, T. Wu, R. Sun, Z. Hong Zhou, Nature, 553, 521-525, (2018).

10.1038/nature25438

524

Multiple beam ptychography for large field-of-view, high throughput, quantitative phase contrast imaging

C. Bevis, R. Karl, J. Reichanadter, D. F. Gardner, C. Porter, E. Shanblatt, M. Tanksalvala, G. F. Mancini, H. Kapteyn, M. Murnane, D. Adams, Ultramicroscopy, 184, 164-171, (2018).

10.1016/j.ultramic.2017.08.018

525

Secondary Electron Contrast in STEM Electron Beam-Induced Current (EBIC): a Path Towards Mapping Electronic Structure

W. A. Hubbard, M. Mecklenburg, H. Chan, B. C. Regan, Microscopy and Microanalysis, 24, 1846-1847, (2018).

10.1017/s1431927618009716

526

General-purpose, wide field-of-view reflection imaging with a tabletop 13 nm light source

C. L. Porter, M. Tanksalvala, M. Gerrity, G. Miley, X. Zhang, C. Bevis, E. Shanblatt, R. Karl, M. M. Murnane, D. E. Adams, H. C. Kapteyn, Optica, 4, 1552-1557, (2017).

10.1364/optica.4.001552

527

Structure of the yeast spliceosomal postcatalytic P complex

S. Liu, X. Li, L. Zhang, J. Jiang, R. C. Hill, Y. Cui, K. C. Hansen, Z. Hong Zhou, R. Zhao, Science, 358, 1278-1283, (2017).

10.1126/science.aar3462

528

Catastrophic disassembly of actin filaments via Mical-mediated oxidation

E. E. Grintsevich, P. Ge, M. R. Sawaya, H. Yesilyurt, J. R. Terman, Z. Hong Zhou, E. Reisler, Nature Communications, 8, (2017).

10.1038/s41467-017-02357-8

529

3D image scanning microscopy with engineered excitation and detection

C. Roider, R. Piestun, A. Jesacher, Optica, 4, 1373, (2017).

10.1364/optica.4.001373

530

A streaming multi-GPU implementation of image simulation algorithms for scanning transmission electron microscopy

A. Pryor, C. Ophus, J. Miao, Advanced Structural and Chemical Imaging, 3, 15, (2017).

10.1186/s40679-017-0048-z

531

Low Dimensional Manifold Model for Image Processing

S. Osher, Z. Shi, W. Zhu, SIAM Journal on Imaging Sciences, 10, 1669-1690, (2017).

10.1137/16m1058686

532

Conformation-Directed Formation of Self-Healing Diblock Copolypeptide Hydrogels via Polyion Complexation

Y. Sun, A. L. Wollenberg, T. O’Shea, Y. Cui, Z. Hong Zhou, M. V. Sofroniew, T. J. Deming, Journal of the American Chemical Society, 139, 15114-15121, (2017).

10.1021/jacs.7b08190

533

Noninvasive Cathodoluminescence-Activated Nanoimaging of Dynamic Processes in Liquids

C. G. Bischak, R. B. Wai, C. Cherqui, J. A. Busche, S. C. Quillin, C. L. Hetherington, Z. Wang, C. D. Aiello, D. G. Schlom, S. Aloni, D. nk Ogletree, D. J. Masiello, N. S. Ginsberg, ACS Nano, 11, 10583-10590, (2017).

10.1021/acsnano.7b06081

534

Resolving ultrafast exciton migration in organic solids at the nanoscale

S. B. Penwell, L. S. Ginsberg, R. Noriega, N. S. Ginsberg, Nature Materials, 16, 1136-1141, (2017).

10.1038/nmat4975

535

First Demonstration of Sub-Wavelength Imaging at Short Wavelengths

D. F. Gardner, E. R. Shanblatt, M. Tanksalvala, X. Zhang, B. R. Galloway, C. L. Porter, R. Karl, C. Bevis, B. Zhang, M. D. Seaberg, G. F. Mancini, D. E. Adams, H. C. Kapteyn, M. M. Murnane, Frontiers in Optics 2017, (2017).

10.1364/ls.2017.lm3f.4

536

Plasmon Energy Mapping in Aluminum and Indium with Sub-Nanometer Resolution

B. Zutter, M. Mecklenburg, B. C. Regan, Microscopy and Microanalysis, 2372, 378-379, (2017).

10.1017/s1431927617002574

537

Temperature-dependent signals in STEM Electron Beam-Induced Current (EBIC) Imaging

W. A. Hubbard, E. R. White, M. Mecklenburg, B. C. Regan, Microscopy and Microanalysis, 23, 1506-1507, (2017).

10.1017/s1431927617008194

538

Detailed In Situ Observations of Electromigration in Aluminum Wires

M. Mecklenburg, B. Zutter, W. A. Hubbard, S. Aloni, B. C. Regan, Microscopy and Microanalysis, 23, 1450-1451, (2017).

10.1017/s1431927617007917

539

In Situ Optical Microscopy of the Electrochemical Intercalation of Lithium into Single Crystal Graphite

J. J. Lodico, M. Woodall, H. Chan, W. A. Hubbard, B. C. Regan, Microscopy and Microanalysis, 23, 1982-1983, (2017).

10.1017/s1431927617010571

540

3D Imaging of Nanoalloy Catalysts at Atomic Resolution

J. Zhou, Y. Yang, Z. Zhao, C. Ophus, P. Ercius, Y. Huang, J. Miao, Microscopy and Microanalysis, 23, 2032-2033, (2017).

10.1017/s1431927617010820

541

STEM EBIC Mapping of the Metal-Insulator Transition in Thin-film NbO2

W. A. Hubbard, T. Joshi, M. Mecklenburg, B. Zutter, P. Borisov, D. Lederman, B. C. Regan, Microscopy and Microanalysis, 23, 1428-1429, (2017).

10.1017/s1431927617007802

542

In Situ Observation of Cooling in a Bismuth Telluride and Bismuth-Antimony Telluride Nanoscale Heterojunction

G. Bal, M. Mecklenburg, W. A. Hubbard, B. Vareskic, B. Zutter, S. Aloni, B. C. Regan, Microscopy and Microanalysis, 23, 1996-1997, (2017).

10.1017/s1431927617010649

543

Atomic structure of the human cytomegalovirus capsid with its securing tegument layer of pp150

X. Yu, J. Jih, J. Jiang, Z. Hong Zhou, Science, 356, eaam6892, (2017).

10.1126/science.aam6892

544

Extremely Wide Field of View Tabletop Ptychographic Imaging with 12.7 nm Illumination

C. L. Porter, M. Tanksalvala, M. Gerrity, G. P. Miley, X. Zhang, C. S. Bevis, E. R. Shanblatt, R. Karl, G. F. Mancini, D. A. Adams, H. C. Kapteyn, M. M. Murnane, Imaging and Applied Optics 2017 (3D, AIO, COSI, IS, MATH, pcAOP), (2017).

10.1364/cosi.2017.cw2b.4

545

Stroboscopic Imaging of Acoustic Waves in Nanostructures using Tabletop High Harmonics

R. Karl, G. Mancini, D. Gardner, J. Knobloch, T. Frazer, J. N. Hernandez-Charpak, B. Mayor, E. Shanblatt, M. Tanksalvala, C. Porter, C. Bevis, D. Adams, H. Kapteyn, M. M. Murnane, Imaging and Applied Optics 2017 (3D, AIO, COSI, IS, MATH, pcAOP), (2017).

10.1364/cosi.2017.cw1b.2

546

Sub-wavelength 12.6nm Resolution Using a Tabletop High Harmonic Coherent Diffractive Microscope

C. Bevis, D. F. Gardner, M. Tanksalvala, E. R. Shanblatt, X. Zhang, B. R. Galloway, C. R. Porter, R. Karl, G. F. Mancini, D. E. Adams, H. Kapteyn, M. M. Murnane, Imaging and Applied Optics 2017 (3D, AIO, COSI, IS, MATH, pcAOP), (2017).

10.1364/cosi.2017.cw2b.3

547

Reliable computational design of biological-inorganic materials to the large nanometer scale using Interface-FF

C. C. Dharmawardhana, K. Kanhaiya, T. Lin, A. Garley, M. R. Knecht, J. Zhou, J. Miao, H. Heinz, Molecular Simulation, 43, 1394-1405, (2017).

10.1080/08927022.2017.1332414

548

Correlative cellular ptychography with functionalized nanoparticles at the Fe L-edge

M. Gallagher-Jones, C. Dias, A. Pryor, K. Bouchmella, L. Zhao, Y. Lo, M. Cardoso, D. Shapiro, J. Rodriguez, J. Miao, Scientific Reports, 4757, (2017).

10.1038/s41598-017-04784-5

549

Imaging the spatial modulation of a relativistic electron beam

C. Zhang, D. Cesar, W. Graves, C. Limborg, L. Malin, J. Maxson, P. Musumeci, E. Nanni, J. Spence, A. Urbanowicz, Proceedings of the 8th Int. Particle Accelerator Conf., Denmark, (2017).

10.18429/JACOW-IPAC2017-MOPAB150

550

Enhanced information content for three-dimensional localization and tracking using the double-helix point spread function with variable-angle illumination epifluorescence microscopy

D. Wang, A. Agrawal, R. Piestun, D. K. Schwartz, Applied Physics Letters, 110, 211107, (2017).

10.1063/1.4984133

STROBE Publications

2018