Publications

101

Accurate real space iterative reconstruction (RESIRE) algorithm for tomography

M. Pham, Y. Yuan, A. Rana, S. Osher, J. Miao, Scientific Reports, 13, (2023).

102

Evaluation protocol for revealing magnonic contrast in TR-STXM measurements

B. Zingsem, T. Feggeler, R. Meckenstock, D. Spoddig, T. Schaffers, S. Pile, H. Ohldag, M. Farle, H. Wende, A. Ney, K. Ollefs, AIP Advances, 13, 045020, (2023).

10.1063/5.0145753

103

Cryo-EM structure of amyloid fibril formed by α-synuclein hereditary A53E mutation reveals a distinct protofilament interface

C. Sun, K. Zhou, P. DePaola, W. Shin, T. Hillyer, M. R. Sawaya, R. Zhu, C. Peng, Z. Hong Zhou, L. Jiang, Journal of Biological Chemistry, 299, 104566, (2023).

10.1016/j.jbc.2023.104566

104

Student experiences with authentic research in a remote, introductory course-based undergraduate research experience in physics

K. A. Oliver, A. Werth, H. J. Lewandowski, Physical Review Physics Education Research, 19, 010124, (2023).

10.1103/physrevphyseducres.19.010124

105

Operando Label-Free Optical Imaging of Solution-Phase Ion Transport and Electrochemistry

J. K. Utterback, A. J. King, L. Belman-Wells, D. M. Larson, L. M. Hamerlynck, A. Z. Weber, N. S. Ginsberg, ACS Energy Letters, 8, 1785-1792, (2023).

10.1021/acsenergylett.3c00129

106

Experimental Characterization of Photoemission from Plasmonic Nanogroove Arrays

C. M. Pierce, D. B. Durham, F. Riminucci, S. Dhuey, I. Bazarov, J. Maxson, A. M. Minor, D. Filippetto, Physical Review Applied, 19, 034034, (2023).

10.1103/physrevapplied.19.034034

107

Excitation Intensity-Dependent Quantum Yield of Semiconductor Nanocrystals

S. Ghosh, U. Ross, A. M. Chizhik, Y. Kuo, B. Jeong, W. Bae, K. Park, J. Li, D. Oron, S. Weiss, J. Enderlein, A. I. Chizhik, The Journal of Physical Chemistry Letters, 14, 2702-2707, (2023).

10.1021/acs.jpclett.3c00143

108

Universal Behavior of Highly Confined Heat Flow in Semiconductor Nanosystems: From Nanomeshes to Metalattices

B. McBennett, A. Beardo, E. E. Nelson, B. Abad, T. D. Frazer, A. Adak, Y. Esashi, B. Li, H. C. Kapteyn, M. M. Murnane, J. L. Knobloch, Nano Letters, 23, 2129-2136, (2023).

10.1021/acs.nanolett.2c04419

109

Students’ views about experimental physics in a large-enrollment introductory lab focused on experimental scientific practices

N. Sulaiman, A. Werth, H. J. Lewandowski, Physical Review Physics Education Research, 19, 010116, (2023).

10.1103/physrevphyseducres.19.010116

110

Identification of Unknown Nanofabrication Chemicals Using Raman Spectroscopy and Deep Learning

N. Theobald, D. Ledvina, K. Kukula, S. Maines, K. Hasz, M. Raschke, J. Crawford, J. Jessing, Y. Li, IEEE Sensors Journal, 23, 7910-7916, (2023).

10.1109/jsen.2023.3249668

111

Nanoscale mapping of point defect concentrations with 4D-STEM

S. H. Mills, S. E. Zeltmann, P. Ercius, A. A. Kohnert, B. P. Uberuaga, A. M. Minor, Acta Materialia, 1, 118721, (2023).

10.1016/j.actamat.2023.118721

112

Structural basis of HIV-1 Vif-mediated E3 ligase targeting of host APOBEC3H

F. Ito, A. L. Alvarez-Cabrera, K. Kim, Z. ng Zhou, X. S. Chen, Nature Communications, 14, 5241, (2023).

10.1038/s41467-023-40955-x

113

Fragment-Based Ab Initio Phasing of Peptidic Nanocrystals by MicroED

L. S. Richards, M. D. Flores, C. Millán, C. Glynn, C. Zee, M. R. Sawaya, M. Gallagher-Jones, R. J. Borges, I. Usón, J. A. Rodriguez, ACS Bio & Med Chem Au, 3, 201-210, (2023).

10.1021/acsbiomedchemau.2c00082

114

Native structure of mosquito salivary protein uncovers domains relevant to pathogen transmission

S. Liu, X. Xia, E. Calvo, Z. Hong Zhou, Nature Communications, 14, 899, (2023).

10.1038/s41467-023-36577-y

115

Asymmetric reconstruction of the aquareovirus core at near-atomic resolution and mechanism of transcription initiation

A. Stevens, Y. Cui, S. Shivakoti, Z. Zhou, Protein & Cell, 14, 1-5, (2023).

10.1093/procel/pwad002

116

Three-dimensional topological magnetic monopoles and their interactions in a ferromagnetic meta-lattice

A. Rana, C. Liao, E. Iacocca, J. Zou, M. Pham, X. Lu, E. Subramanian, Y. Lo, S. A. Ryan, C. S. Bevis, R. M. Karl, A. J. Glaid, J. Rable, P. Mahale, J. Hirst, T. Ostler, W. Liu, C. M. O’Leary, Y. Yu, K. Bustillo, H. Ohldag, D. A. Shapiro, S. Yazdi, T. E. Mallouk, S. J. Osher, H. C. Kapteyn, V. H. Crespi, J. V. Badding, Y. Tserkovnyak, M. M. Murnane, J. Miao, Nature Nanotechnology, 18, 227–232, (2023).

10.1038/s41565-022-01311-0

117

Multimodal Characterization of Crystal Structure and Formation in Rubrene Thin Films Reveals Erasure of Orientational Discontinuities

J. A. Tan, J. T. Dull, S. E. Zeltmann, J. A. Tulyagankhodjaev, H. M. Johnson, A. Liebman‐Peláez, B. D. Folie, S. A. Dönges, O. Khatib, J. G. Raybin, T. D. Roberts, L. M. Hamerlynck, C. N. Tanner, J. Lee, C. Ophus, K. C. Bustillo, M. B. Raschke, H. Ohldag, A. M. Minor, B. P. Rand, N. S. Ginsberg, Advanced Functional Materials, 33, 2207867, (2023).

10.1002/adfm.202207867

118

Observation of spin-momentum locked surface states in amorphous Bi2Se3

P. Corbae, S. Ciocys, D. Varjas, E. Kennedy, S. Zeltmann, M. Molina-Ruiz, S. M. Griffin, C. Jozwiak, Z. Chen, L. Wang, A. M. Minor, M. Scott, A. G. Grushin, A. Lanzara, F. Hellman, Nature Materials, 22, 200-206, (2023).

10.1038/s41563-022-01458-0

119

Optical reflectance imaging reveals interlayer coupling in mechanically stacked MoS2 and WS2 bilayers

V. Nguyen, W. Li, J. Ager, K. Xu, H. Taylor, Optics Express, 31, 3291, (2023).

10.1364/oe.473397

120

Deep-Learning Electron Diffractive Imaging

D. J. Chang, C. M. O’Leary, C. Su, D. A. Jacobs, S. Kahn, A. Zettl, J. Ciston, P. Ercius, J. Miao, Physical Review Letters, 130, 016101, (2023).

10.1103/physrevlett.130.016101

121

Exceeding the limits of algorithmic self-calibrated aberration recovery in Fourier ptychography

E. Li, S. Sherwin, G. Gunjala, L. Waller, Optics Continuum, 2, 119, (2023).

10.1364/optcon.475990

122

Discovery, structure, and function of filamentous 3-methylcrotonyl-CoA carboxylase

J. J. Hu, J. J. Lee, Y. Liu, C. Yu, L. Huang, I. Aphasizheva, R. Aphasizhev, Z. Hong Zhou, Structure, 31, 100-110.e4, (2023).

10.1016/j.str.2022.11.015

123

CryoEM structures of anion exchanger 1 capture multiple states of inward- and outward-facing conformations

H. R. Zhekova, J. Jiang, W. Wang, K. Tsirulnikov, G. Kayık, H. Khan, R. Azimov, N. Abuladze, L. Kao, D. Newman, S. u. Noskov, D. er Tieleman, Z. Hong Zhou, A. Pushkin, I. Kurtz, Communications Biology, 5, (2022).

10.1038/s42003-022-04306-8

124

Disentangling multiple scattering with deep learning: application to strain mapping from electron diffraction patterns

J. Munshi, A. Rakowski, B. H. Savitzky, S. E. Zeltmann, J. Ciston, M. Henderson, S. Cholia, A. M. Minor, M. Y. Chan, C. Ophus, npj Computational Materials, 8, (2022).

10.1038/s41524-022-00939-9

125

Visible-Light Azidation and Chemical Patterning of Graphene via Photoredox Catalysis

W. Li, Y. Li, B. Wang, K. Xu, The Journal of Physical Chemistry C, 126, 21281-21286, (2022).

10.1021/acs.jpcc.2c07399

126

Ultrafast electron diffraction: Visualizing dynamic states of matter

D. D. Filippetto, P. P. Musumeci, R. K. Li, B. J. Siwick, M. R. Otto, M. M. Centurion, J. F. Nunes, Reviews of Modern Physics, 94, 045004, (2022).

10.1103/revmodphys.94.045004

127

Accurate quantification of lattice temperature dynamics from ultrafast electron diffraction of single-crystal films using dynamical scattering simulations

D. B. Durham, C. Ophus, K. M. Siddiqui, A. M. Minor, D. Filippetto, Structural Dynamics, 9, 064302, (2022).

10.1063/4.0000170

128

Robust and reliable actinic ptychographic imaging of highly periodic structures in EUV photomasks

B. Wang, N. Brooks, M. Tanksalvala, Y. Esashi, N. Jenkins, P. Johnsen, I. Binnie, G. Gui, Y. Shao, M. Murnane, H. Kapteyn, Photomask Technology 2022, 12293, 122930D, (2022).

10.1117/12.2641726

129

A closer look at spin textures

J. Miao, M. M. Murnane, Nature Nanotechnology, (2022).

10.1038/s41565-022-01262-6

130

Zwitterions in 3D Perovskites: Organosulfide-Halide Perovskites

J. Li, Z. Chen, S. Saha, J. K. Utterback, M. L. Aubrey, R. Yuan, H. L. Weaver, N. S. Ginsberg, K. W. Chapman, M. R. Filip, H. I. Karunadasa, Journal of the American Chemical Society, 144, 22403-22408, (2022).

10.1021/jacs.2c09382

131

Structures and comparison of endogenous 2-oxoglutarate and pyruvate dehydrogenase complexes from bovine kidney

S. Liu, X. Xia, J. Zhen, Z. Li, Z. ng Zhou, Cell Discovery, 8, 126, (2022).

10.1038/s41421-022-00487-y

132

Is a complete Mueller matrix necessary in biomedical imaging?

T. Novikova, J. C. Ramella-Roman, Optics Letters, 47, 5549, (2022).

10.1364/ol.471239

133

Super-resolved time-frequency measurements of coupled phonon dynamics in a 2D quantum material

C. Gentry, C. Liao, W. You, S. A. Ryan, B. Varner, X. Shi, M. Guan, T. Gray, D. Temple, S. Meng, M. Raschke, K. Rossnagel, H. C. Kapteyn, M. M. Murnane, E. Cating-Subramanian, Scientific Reports, 12, 19734, (2022).

10.1038/s41598-022-22055-w

134

Nanoscale heterogeneity of ultrafast many-body carrier dynamics in triple cation perovskites

J. Nishida, P. S. Chang, J. Y. Ye, P. Sharma, D. M. Wharton, S. C. Johnson, S. E. Shaheen, M. B. Raschke, Nature Communications, 13, 6582, (2022).

10.1038/s41467-022-33935-0

135

Instructor perspectives on the emergency transition to remote instruction of physics labs

A. Werth, J. R. Hoehn, K. Oliver, M. J. Fox, H. J. Lewandowski, Physical Review Physics Education Research, 18, 020129, (2022).

10.1103/physrevphyseducres.18.020129

136

High-Resolution Conductivity Mapping with STEM EBIC

W. Hubbard, H. Chan, B. C. Regan, International Symposium for Testing and Failure Analysis, istfa2022p0251, 251-253, (2022).

10.31399/asm.cp.istfa2022p0251

137

Isotropic reconstruction for electron tomography with deep learning

Y. Liu, H. Zhang, H. Wang, C. Tao, G. Bi, Z. ng Zhou, Nature Communications, 13, 6482, (2022).

10.1038/s41467-022-33957-8

138

Assessing student engagement with teamwork in an online, large-enrollment course-based undergraduate research experience in physics

A. Werth, K. Oliver, C. G. West, H. J. Lewandowski, Physical Review Physics Education Research, 18, 020128, (2022).

10.1103/physrevphyseducres.18.020128

139

Structural consequences of sequence variation in mammalian prion β2α2 loop segments

C. Glynn, E. Hernandez, M. Gallagher-Jones, J. Miao, C. J. Sigurdson, J. A. Rodriguez, Frontiers in Neuroscience, 16, (2022).

10.3389/fnins.2022.960322

140

Atomic model of vesicular stomatitis virus and mechanism of assembly

K. Zhou, Z. Si, P. Ge, J. Tsao, M. Luo, Z. ng Zhou, Nature Communications, 13, 5980, (2022).

10.1038/s41467-022-33664-4

141

Homogeneous, Micron-Scale High-Energy-Density Matter Generated by Relativistic Laser-Solid Interactions

N. F. Beier, H. H. Allison, P. P. Efthimion, K. A. Flippo, L. L. Gao, S. B. Hansen, K. K. Hill, R. R. Hollinger, M. M. Logantha, Y. Y. Musthafa, R. R. Nedbailo, V. V. Senthilkumaran, R. R. Shepherd, V. N. Shlyaptsev, H. H. Song, S. S. Wang, F. F. Dollar, J. J. Rocca, A. E. Hussein, Physical Review Letters, 129, 135001, (2022).

10.1103/physrevlett.129.135001

142

Observation of formation and local structures of metal-organic layers via complementary electron microscopy techniques

X. Peng, P. M. Pelz, Q. Zhang, P. Chen, L. Cao, Y. Zhang, H. Liao, H. Zheng, C. Wang, S. Sun, M. C. Scott, Nature Communications, 13, 5197, (2022).

10.1038/s41467-022-32330-z

143

Structural and Elastic Properties of Empty-Pore Metalattices Extracted via Nondestructive Coherent Extreme UV Scatterometry and Electron Tomography

J. L. Knobloch, B. McBennett, C. S. Bevis, S. Yazdi, T. D. Frazer, A. Adak, E. E. Nelson, J. N. Hernández-Charpak, H. Y. Cheng, A. J. Grede, P. Mahale, N. Nova, N. C. Giebink, T. E. Mallouk, J. V. Badding, H. C. Kapteyn, B. Abad, M. M. Murnane, ACS Applied Materials & Interfaces, 14, 41316-41327, (2022).

10.1021/acsami.2c09360

144

Chemical Shift Detection with Energy Dispersive Spectroscopy (EDS)

R. Jin, B. Zutter, B. C. Regan, M. Mecklenburg, Microscopy and Microanalysis, 27, 2068-2069, (2021).

10.1017/s1431927621007480

145

Atomic Structure of IglD Demonstrates Its Role as a Component of the Baseplate Complex of the Francisella Type VI Secretion System

X. Liu, D. L. Clemens, B. Lee, X. Yang, Z. ng Zhou, M. A. Horwitz, mBio, 13, (2022).

10.1128/mbio.01277-22

146

Electron Diffraction of 3D Molecular Crystals

A. Saha, S. S. Nia, J. A. Rodríguez, Chemical Reviews, 122, 13883-13914, (2022).

10.1021/acs.chemrev.1c00879

147

Roadmap on wavefront shaping and deep imaging in complex media

S. Gigan, O. Katz, H. de Aguiar, E. Andresen, A. Aubry, J. Bertolotti, E. Bossy, D. Bouchet, J. Brake, S. Brasselet, Y. Bromberg, H. Cao, T. Chaigne, Z. Cheng, W. Choi, T. Čižmár, M. Cui, V. Curtis, H. Defienne, M. Hofer, R. Horisaki, R. Horstmeyer, N. Ji, A. LaViolette, J. Mertz, C. Moser, A. Mosk, N. Pégard, R. Piestun, S. Popoff, D. Phillips, D. Psaltis, B. Rahmani, H. Rigneault, S. Rotter, L. Tian, I. Vellekoop, L. Waller, L. Wang, T. Weber, S. Xiao, C. Xu, A. Yamilov, C. Yang, H. Yılmaz, Journal of Physics: Photonics, 4, 042501, (2022).

10.1088/2515-7647/ac76f9

148

Temporal and spectral multiplexing for EUV multibeam ptychography with a high harmonic light source

N. J. Brooks, B. Wang, I. Binnie, M. Tanksalvala, Y. Esashi, J. L. Knobloch, Q. D. Nguyen, B. McBennett, N. W. Jenkins, G. Gui, Z. Zhang, H. C. Kapteyn, M. M. Murnane, C. S. Bevis, Optics Express, 30, 30331, (2022).

10.1364/oe.458955

149

A Multislice Approach to Quantify Laser-Induced Lattice Temperature from Ultrafast Electron Diffraction Measurements of Single-Crystal Films

D. Durham, K. Siddiqui, C. Ophus, A. Minor, D. Filippetto, Microscopy and Microanalysis, 28, 888-890, (2022).

10.1017/s1431927622003920

150

Separation of EBIC Modes with Two-Channel STEM EBIC

W. A. Hubbard, H. Chan, M. Mecklenburg, B. C. Regan, Microscopy and Microanalysis, 28, 2508-2509, (2022).

10.1017/s143192762200959x

STROBE Publications

2023