Publications

301

Machine Learning for High Throughput HRTEM Analysis

C. Groschner, C. Choi, D. Nguyen, C. Ophus, M. Scott, Microscopy and Microanalysis, 25, 150-151, (2019).

10.1017/s143192761900148x

302

Probing thermal and acoustic dynamics of inverse silicon metallatices

C. C. Bevis, B. B. Abad, J. J. Knobloch, T. T. Frazer, A. A. Adak, J. J. Hernández-Charpak, H. H. Cheng, A. A. Grede, N. N. Giebink, N. N. Nova, T. T. Mallouk, P. P. Mahale, W. W. Chen, Y. Y. Xiong, I. I. Dabo, V. V. Crespi, D. D. Talreja, H. H. Kapteyn, V. V. Gopalan, J. J. Badding, M. M. Murnane, Microscopy and Microanalysis, 25, 2174-2175, (2019).

10.1017/s1431927619011607

303

Adjusting the STEM Sample Holder Potential for Improved EBIC Contrast

M. Mecklenburg, W. A. Hubbard, H. Chan, B. C. Regan, Microscopy and Microanalysis, 25, 2354-2355, (2019).

10.1017/s1431927619012509

304

Full-Field Stroboscopic Imaging of Acoustic and Thermal Dynamics in Isolated Nanostructures Using Tabletop EUV Coherent Imaging

B. Wang, R. Karl, G. Mancini, J. Knobloch, T. Frazer, B. Mayor, M. Tanksalvala, C. Bevis, H. Kapteyn, J. N. Hernandez-Charpak, M. Murnane, Microscopy and Microanalysis, 25, 42-43, (2019).

10.1017/s1431927619000941

305

Inducing Electrically-Active Defects in a Gallium Arsenide Nanowire with an Electron Beam

B. T. Zutter, H. Kim, W. A. Hubbard, D. Ren, J. J. Lodico, T. Chang, D. Huffaker, B. C. Regan, Microscopy and Microanalysis, 25, 1618-1619, (2019).

10.1017/s1431927619008821

306

A new approach for measuring of two-photon absorption using entangled photon pair excitation

A. Mikhaylov, M. D. Mazurek, K. M. Parzuchowski, T. Gerrits, M. J. Stevens, R. Jimenez, Rochester Conference on Coherence and Quantum Optics (CQO-11), (2019).

10.1364/cqo.2019.m5a.1

307

Knife-edge based measurement of the 4D transverse phase space of electron beams with picometer-scale emittance

F. Ji, J. Navarro, P. Musumeci, D. B. Durham, A. M. Minor, D. Filippetto, Physical Review Accelerators and Beams, 15, 082801, (2019).

10.1103/physrevaccelbeams.22.082801

308

Data-driven challenges and opportunities in crystallography

C. Glynn, J. A. Rodriguez, Emerging Topics in Life Sciences, 3, 423-432, (2019).

10.1042/etls20180177

309

Speckle-structured illumination for 3D phase and fluorescence computational microscopy

L. Yeh, S. Chowdhury, N. A. Repina, L. Waller, Biomedical Optics Express, 10, 3635, (2019).

10.1364/boe.10.003635

310

Observing crystal nucleation in four dimensions using atomic electron tomography

J. Zhou, Y. Yang, Y. Yang, D. S. Kim, A. Yuan, X. Tian, C. Ophus, F. Sun, A. K. Schmid, M. Nathanson, H. Heinz, Q. An, H. Zeng, P. Ercius, J. Miao, Nature, 570, 500-503, (2019).

10.1038/s41586-019-1317-x

311

Improved Surface Functionalization and Characterization of Membrane-Targeted Semiconductor Voltage Nanosensors

J. Park, Y. Kuo, J. Li, Y. Huang, E. W. Miller, S. Weiss, The Journal of Physical Chemistry Letters, 10, 3906-3913, (2019).

10.1021/acs.jpclett.9b01258

312

Ultrasensitive Tip- and Antenna-Enhanced Infrared Nanoscopy of Protein Complexes

B. T. O’Callahan, M. Hentschel, M. B. Raschke, P. Z. El-Khoury, A. tt Lea, The Journal of Physical Chemistry C, 123, 17505-17509, (2019).

10.1021/acs.jpcc.9b05777

313

Complex Imaging Reflectometry for Dopant Profile Measurements using Tabletop High Harmonic Light

M. Tanksalvala, C. L. Porter, Y. Esashi, G. P. Miley, N. Horiguchi, R. M. Karl, P. Johnsen, C. S. Bevis, N. W. Jenkins, B. Wang, X. Zhang, S. L. Cousin, D. E. Adams, M. Gerrity, H. C. Kapteyn, M. M. Murnane, Imaging and Applied Optics 2019 (COSI, IS, MATH, pcAOP), (2019).

10.1364/cosi.2019.cw3a.6

314

Advances in in situ nanomechanical testing

A. M. Minor, G. Dehm, MRS Bulletin, 44, 438-442, (2019).

10.1557/mrs.2019.127

315

High Performance Partial Coherent X-Ray Ptychography

P. Enfedaque, H. Chang, B. Enders, D. Shapiro, S. Marchesini, Computational Science – ICCS 2019, 11536, 46 - 59, (2019).

10.1007/978-3-030-22734-0_4

316

Deep learning for single-shot autofocus microscopy

H. Pinkard, Z. Phillips, A. Babakhani, D. A. Fletcher, L. Waller, Optica, 6, 794, (2019).

10.1364/optica.6.000794

317

Direct observation of picosecond melting and disintegration of metallic nanoparticles

Y. Ihm, D. Cho, D. Sung, D. Nam, C. Jung, T. Sato, S. Kim, J. Park, S. Kim, M. Gallagher-Jones, Y. Kim, R. Xu, S. Owada, J. Shim, K. Tono, M. Yabashi, T. Ishikawa, J. Miao, D. Noh, C. Song, Nature Communications, 10, 2411, (2019).

10.1038/s41467-019-10328-4

318

Cryo-EM structures of herpes simplex virus type 1 portal vertex and packaged genome

Y. Liu, J. Jih, X. Dai, G. Bi, Z. ng Zhou, Nature, 570, 257-261, (2019).

10.1038/s41586-019-1248-6

319

Ultrafast Relativistic Electron Nanoprobes

F. F. Ji, D. B. Durham, A. M. Minor, P. P. Musumeci, J. G. Navarro, D. D. Filippetto, Communications Physics, 2, 54, (2019).

10.1038/s42005-019-0154-4

320

In situ structures of rotavirus polymerase in action and mechanism of mRNA transcription and release

K. Ding, C. C. Celma, X. Zhang, T. Chang, W. Shen, I. Atanasov, P. Roy, Z. Hong Zhou, Nature Communications, 10, 2216, (2019).

10.1038/s41467-019-10236-7

321

Elastin-Dependent Aortic Heart Valve Leaflet Curvature Changes During Cyclic Flexure

M. D. Tesfamariam, A. M. Mirza, D. Chaparro, A. Z. Ali, R. Montalvan, I. Saytashev, B. A. Gonzalez, A. Barreto, J. Ramella-Roman, J. D. Hutcheson, S. Ramaswamy, Bioengineering, 6, 39, (2019).

10.3390/bioengineering6020039

322

An Extreme Ultraviolet Spin Grating for Spatially Resolved, Hyperspectral Magnetic Dichroism Spectroscopies

N. J. Brooks, K. M. Dorney, J. L. Ellis, D. D. Hickstein, Q. L. Nguyen, C. Gentry, C. Hernández-García, D. Zusin, J. M. Shaw, G. S. Matthijs Jansen, S. Witte, H. C. Kapteyn, M. M. Murnane, Conference on Lasers and Electro-Optics, (2019).

10.1364/cleo_qels.2019.ff2c.7

323

SQUARREL: Scattering Quotient Analysis to Retrieve the Ratio of Elements in X-ray Ptychography

C. Liao, Y. Lo, J. Zhou, A. Rana, C. S. Bevis, G. Gui, B. Enders, K. Cannon, D. Shapiro, C. Bennett, H. Kapteyn, R. Falcone, J. Miao, M. Murnane, Microscopy and Microanalysis, 25, 112-113, (2019).

10.1017/s1431927619001296

324

Moments reconstruction and local dynamic range compression of high order superresolution optical fluctuation imaging

X. Yi, S. Son, R. Ando, A. Miyawaki, S. Weiss, Biomedical Optics Express, 10, 2430, (2019).

10.1364/boe.10.002430

325

Spectral image scanning microscopy

F. Strasser, M. Offterdinger, R. Piestun, A. Jesacher, Biomedical Optics Express, 10, 2513, (2019).

10.1364/boe.10.002513

326

Information-rich localization microscopy through machine learning

T. Kim, S. Moon, K. Xu, Nature Communications, 10, 1996, (2019).

10.1038/s41467-019-10036-z

327

Investigating the dynamics of ontological reasoning across contexts in quantum physics

J. R. Hoehn, J. D. Gifford, N. D. Finkelstein, Physical Review Physics Education Research, 15, 010124, (2019).

10.1103/physrevphyseducres.15.010124

328

Structure of the human ClC-1 chloride channel

K. Wang, S. Preisler, L. Zhang, Y. Cui, J. Missel, C. Grønberg, K. Gotfryd, E. Lindahl, M. Andersson, K. Calloe, P. F. Egea, D. Klaerke, M. Pusch, P. Pedersen, Z. Hong Zhou, P. Gourdon, PLOS Biology, 17, e3000218, (2019).

10.1371/journal.pbio.3000218

329

A 3.8 Å resolution cryo-EM structure of a small protein bound to an imaging scaffold

Y. Liu, D. T. Huynh, T. O. Yeates, Nature Communications, 10, 1864, (2019).

10.1038/s41467-019-09836-0

330

Fostering sustainable improvements in science education: An analysis through four frames

D. L. Reinholz, C. Ngai, G. Quan, M. E. Pilgrim, J. C. Corbo, N. Finkelstein, Science Education, 103, 1125-1150, (2019).

10.1002/sce.21526

331

Tabletop EUV Coherent Diffractive Imaging and Small Angle Scattering of Colloidal Crystals

M. Giulia F., R. Karl, S. Elisabeth, B. Charles, G. Dennis, T. Michael, R. Jennifer, A. Daniel, K. Henry, B. John, M. Thomas, M. Margaret, EPJ Web of Conferences, 205, 05015, (2019).

10.1051/epjconf/201920505015

332

Ultra-low thermal conductivity and acoustic dynamics of Si nanostructured metalattices probed using ultrafast high harmonic beams

B. Abad, T. Frazer, J. Knobloch, J. Hernández-Charpak, H. Cheng, A. Grede, N. Giebink, T. Mallouk, P. Mahale, W. Chen, Y. Xiong, I. Dabo, V. Crespi, D. Talreja, V. Gopalan, J. Badding, H. Kapteyn, M. Murnane, EPJ Web of Conferences, 205, 04006, (2019).

10.1051/epjconf/201920504006

333

Ultrafast dynamic imaging of thermal and acoustic dynamics in nanosystems using a tabletop high harmonic source

C. Bevis, K. r. Robert, G. F. Mancini, D. Gardner, E. Shanblatt, J. Knobloch, T. Frazer, J. N. Hernandez-Charpak, B. Mayor, M. Tanksalvala, C. Porter, D. Adams, H. Kapteyn, M. M. Murnane, EPJ Web of Conferences, 205, 04005, (2019).

10.1051/epjconf/201920504005

334

Advanced denoising for X-ray ptychography

H. Chang, P. Enfedaque, J. Zhang, J. Reinhardt, B. Enders, Y. Yu, D. Shapiro, C. G. Schroer, T. Zeng, S. Marchesini, Optics Express, 27, 10395, (2019).

10.1364/oe.27.010395

335

Infrared nanospectroscopic imaging in the rotating frame

S. C. Johnson, E. A. Muller, O. Khatib, E. A. Bonnin, A. C. Gagnon, M. B. Raschke, Optica, 6, 424, (2019).

10.1364/optica.6.000424

336

Recent advances in ultrafast X-ray sources

R. Schoenlein, T. Elsaesser, K. Holldack, Z. Huang, H. Kapteyn, M. Murnane, M. Woerner, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 377, 20180384, (2019).

10.1098/rsta.2018.0384

337

Variable-wavelength tabletop-scale EUV ptychographic complex imaging reflectometry for 3D composition determination

M. Tanksalvala, C. L. Porter, Y. Esashi, G. P. Miley, R. Karl, P. Johnsen, N. W. Jenkins, C. S. Bevis, B. Wang, J. Thurston, X. Zhang, S. L. Cousin, D. E. Adams, M. Gerrity, H. C. Kapteyn, M. M. Murnane, Metrology, Inspection, and Process Control for Microlithography XXXIII, (2019).

10.1117/12.2516827

338

pH-dependent gating mechanism of the Helicobacter pylori urea channel revealed by cryo-EM

Y. Cui, K. Zhou, D. Strugatsky, Y. Wen, G. Sachs, Z. Hong Zhou, K. Munson, Science Advances, 5, eaav8423, (2019).

10.1126/sciadv.aav8423

339

Physics-based Learned Design: Optimized Coded-Illumination for Quantitative Phase Imaging

M. R. Kellman, E. Bostan, N. A. Repina, L. Waller, IEEE Transactions on Computational Imaging, 344-353, (2019).

10.1109/tci.2019.2905434

340

Optical phantoms for biomedical polarimetry: a review

J. Chue-Sang, M. Gonzalez, A. Pierre, M. Laughrey, I. Saytashev, T. Novikova, J. C. Ramella-Roman, Journal of Biomedical Optics, 24, 1, (2019).

10.1117/1.jbo.24.3.030901

341

Homochiral and racemic MicroED structures of a peptide repeat from the ice-nucleation protein InaZ

C. Zee, C. Glynn, M. Gallagher-Jones, J. Miao, C. G. Santiago, D. Cascio, T. Gonen, M. R. Sawaya, J. A. Rodriguez, IUCrJ, 6, 197-205, (2019).

10.1107/s2052252518017621

342

Atomic structures and deletion mutant reveal different capsid-binding patterns and functional significance of tegument protein pp150 in murine and human cytomegaloviruses with implications for therapeutic development

W. Liu, X. Dai, J. Jih, K. Chan, P. Trang, X. Yu, R. Balogun, Y. Mei, F. Liu, Z. Hong Zhou, PLOS Pathogens, 15, e1007615, (2019).

10.1371/journal.ppat.1007615

343

Excitation and Emission Transition Dipoles of Type-II Semiconductor Nanorods

S. Ghosh, A. M. Chizhik, G. Yang, N. Karedla, I. Gregor, D. Oron, S. Weiss, J. Enderlein, A. I. Chizhik, Nano Letters, 19, 1695-1700, (2019).

10.1021/acs.nanolett.8b04695

344

Atomic structure of the translation regulatory protein NS1 of bluetongue virus

A. Kerviel, P. Ge, M. Lai, J. Jih, M. Boyce, X. Zhang, Z. Hong Zhou, P. Roy, Nature Microbiology, 4, 837-845, (2019).

10.1038/s41564-019-0369-x

345

Two-photon PSF-engineered image scanning microscopy

O. Tzang, D. Feldkhun, A. Agrawal, A. Jesacher, R. Piestun, Optics Letters, 44, 895, (2019).

10.1364/ol.44.000895

346

Engineering Nanoscale Thermal Transport: Size- and Spacing-Dependent Cooling of Nanostructures

T. D. Frazer, J. L. Knobloch, K. M. Hoogeboom-Pot, D. Nardi, W. Chao, R. W. Falcone, M. M. Murnane, H. C. Kapteyn, J. N. Hernandez-Charpak, Physical Review Applied, 11, 024042, (2019).

10.1103/physrevapplied.11.024042

347

Focusability of laser pulses at petawatt transport intensities in thin-film compression

D. M. Farinella, J. J. Wheeler, A. E. Hussein, J. J. Nees, M. M. Stanfield, N. N. Beier, Y. Y. Ma, G. G. Cojocaru, R. R. Ungureanu, M. M. Pittman, J. J. Demailly, E. E. Baynard, R. R. Fabbri, M. M. Masruri, R. R. Secareanu, A. A. Naziru, R. R. Dabu, A. A. Maksimchuk, K. K. Krushelnick, D. D. Ros, G. G. Mourou, T. T. Tajima, F. F. Dollar, Journal of the Optical Society of America B, 36, A28, (2018).

10.1364/josab.36.000a28

348

Temporal magnification for streaked ultrafast electron diffraction and microscopy

D. D. Cesar, P. P. Musumeci, Ultramicroscopy, 199, 1-6, (2019).

10.1016/j.ultramic.2019.01.003

349

Generalized proximal smoothing (GPS) for phase retrieval

M. Pham, P. Yin, A. Rana, S. Osher, J. Miao, Optics Express, 17, 2792-2808, (2019).

10.1364/oe.27.002792

350

Nanoscale mosaicity revealed in peptide microcrystals by scanning electron nanodiffraction

M. Gallagher-Jones, C. Ophus, K. C. Bustillo, D. R. Boyer, O. Panova, C. Glynn, C. Zee, J. Ciston, K. Mancia, A. M. Minor, J. A. Rodriguez, Communications Biology, 2, 26, (2019).

10.1038/s42003-018-0263-8

STROBE Publications

2019