Scientific Refereed

1

Accounting for electron-beam-induced warping of molecular nanocrystals in MicroED structure determination

N. Vlahakis, A. Clauss, J. A. Rodriguez, IUCrJ, 12, 223-238, (2025).

10.1107/s2052252524012132

2

A Liquid-Core Fiber Platform for Classical and Entangled Two-Photon Absorption Measurements

K. M. Parzuchowski, M. D. Mazurek, C. H. Camp, M. J. Stevens, R. Jimenez, ACS Photonics, 4C02076, (2025).

10.1021/acsphotonics.4c02076

3

Correlated nanoimaging of structure and dynamics of cation-polaron coupling in hybrid perovskites

R. Wilcken, B. L. Esses, R. S. Nithyananda Kumar, L. A. Hurley, S. E. Shaheen, M. B. Raschke, Science Advances, 11, eads3706, (2025).

10.1126/sciadv.ads3706

4

Near-Field Thermal Radiation as a Probe of Nanoscale Hot Electron and Phonon Transport

M. Habibi, A. Beardo, L. Cui, ACS Nano, 19, 6033-6043, (2025).

10.1021/acsnano.4c11893

5

Self-Heating Conductive Ceramic Composites for High Temperature Thermal Energy Storage

L. Yang, P. Peng, N. Weger, S. Mills, C. Messeri, A. K. Menon, S. Zeltmann, F. Babbe, Q. Zheng, C. Dun, C. Zhang, J. J. Urban, A. M. Minor, R. Prasher, H. Breunig, S. Lubner, ACS Energy Letters, 10, 1002-1012, (2025).

10.1021/acsenergylett.4c03270

6

Computational microscopy with coherent diffractive imaging and ptychography

J. Miao, Nature, 637, 281-295, (2025).

10.1038/s41586-024-08278-z

7

Robust broadband ptychography algorithms for high-harmonic soft X-ray supercontinua

B. Shearer, H. Kapteyn, I. Binnie, N. W. Jenkins, M. Murnane, Optics Express, 33, 717, (2025).

10.1364/oe.541675

8

Dynamics and structure of the B2→B19’ phase transformation in NiTi revealed through in situ 4D-STEM

J. Donohue, S. H. Mills, B. H. Savitzky, S. E. Zeltmann, C. Ophus, A. M. Minor, Materials Science and Engineering: A, 926, 147951, (2025).

10.1016/j.msea.2025.147951

9

Multi-slice electron ptychographic tomography for three-dimensional phase-contrast microscopy beyond the depth of focus limits

A. Romanov, M. Cho, M. Scott, P. Pelz, Journal of Physics: Materials, 8, 015005, (2024).

10.1088/2515-7639/ad9ad2

10

Composition and in situ structure of the Methanospirillum hungatei cell envelope and surface layer

H. Wang, J. Zhang, S. Liao, A. M. Henstra, D. Leon, J. Erde, J. A. Loo, R. R. Ogorzalek Loo, Z. ng Zhou, R. P. Gunsalus, Science Advances, 10, eadr8596, (2024).

10.1126/sciadv.adr8596

11

Native DGC structure rationalizes muscular dystrophy-causing mutations

S. Liu, T. Su, X. Xia, Z. ng Zhou, Nature, 637, 1261-1271, (2024).

10.1038/s41586-024-08324-w

12

Single-shot ionization-based monitor for pulsed electron beams

P. P. Denham, A. A. Ody, P. P. Musumeci, N. N. Burger, N. N. Cook, G. G. Andonian, Physical Review Applied, 22, 064033, (2024).

10.1103/physrevapplied.22.064033

13

Molecular sociology of virus-induced cellular condensates supporting reovirus assembly and replication

X. Liu, X. Xia, M. W. Martynowycz, T. Gonen, Z. ng Zhou, Nature Communications, 15, 10638, (2024).

10.1038/s41467-024-54968-7

14

From Beam Damage to Massive Reaction Amplification under the Electron Microscope: An Ionization-Induced Chain Reaction in Crystals of a Dewar Benzene

K. A. Konieczny, I. Paul, J. A. Rodriguez, M. A. Garcia-Garibay, ACS Central Science, 10, 2346-2352, (2024).

10.1021/acscentsci.4c01429

15

Capturing intermediates and membrane remodeling in class III viral fusion

L. Milojević, Z. Si, X. Xia, L. Chen, Y. He, S. Tang, M. Luo, Z. ng Zhou, Science Advances, 10, eadn8579, (2024).

10.1126/sciadv.adn8579

16

Reversible Electron Beam Patterning of Colloidal Nanoparticles at Fluid Interfaces

J. G. Raybin, E. J. Dunsworth, V. Guo, N. S. Ginsberg, ACS Applied Materials & Interfaces, 16, 68611-68620, (2024).

10.1021/acsami.4c14882

17

Computational microscopy beyond perfect lenses

X. Lu, M. Pham, E. Negrini, D. Davis, S. J. Osher, J. Miao, Physical Review E, 110, 054407, (2024).

10.1103/physreve.110.054407

18

Structure and identification of the native PLP synthase complex from Methanosarcina acetivorans lysate

A. Agnew, E. Humm, K. Zhou, R. P. Gunsalus, Z. ng Zhou, mBio, 16, e03090-24, (2025).

10.1128/mbio.03090-24

19

Tabletop deep-ultraviolet transient grating for ultrafast nanoscale carrier-transport measurements in ultrawide-band-gap materials

E. E. Nelson, B. McBennett, T. H. Culman, A. Beardo, H. C. Kapteyn, M. H. Frey, M. R. Atkinson, M. M. Murnane, J. L. Knobloch, Physical Review Applied, 22, 054007, (2024).

10.1103/physrevapplied.22.054007

20

Real-time optical thickness determination for producing ultra-thin silicon membranes using anisotropic potassium hydroxide etching

L. Gislason, S. Genc, S. Thompson, J. Crawford, J. Jessing, MRS Advances, (2024).

10.1557/s43580-024-00945-7

21

Aberration correction in epi-fluorescence microscopy using unknown speckle illumination

E. Premillieu, A. M. Caravaca-Aguirre, S. Labouesse, K. Irsch, R. Piestun, Optics Express, 32, 37658, (2024).

10.1364/oe.526148

22

Elucidating the role of Cr migration in Ni-Cr exposed to molten FLiNaK via multiscale characterization

S. H. Mills, R. D. Hayes, N. Bieberdorf, S. E. Zeltmann, A. M. Kennedy, L. Capolungo, M. Asta, R. O. Scarlat, A. M. Minor, Acta Materialia, 279, 120206, (2024).

10.1016/j.actamat.2024.120206

23

The hierarchical structure of organic mixed ionic–electronic conductors and its evolution in water

Y. Tsarfati, K. C. Bustillo, B. H. Savitzky, L. Balhorn, T. J. Quill, A. Marks, J. Donohue, S. E. Zeltmann, C. J. Takacs, A. Giovannitti, I. McCulloch, C. Ophus, A. M. Minor, A. Salleo, Nature Materials, (2024).

10.1038/s41563-024-02016-6

24

Neural space–time model for dynamic multi-shot imaging

R. Cao, N. S. Divekar, J. K. Nuñez, S. Upadhyayula, L. Waller, Nature Methods, (2024).

10.1038/s41592-024-02417-0

25

Architectural organization and in situ fusion protein structure of lymphocytic choriomeningitis virus

J. S. Kang, K. Zhou, H. Wang, S. Tang, K. Lyles, M. Luo, Z. ng Zhou, Journal of Virology, 98, (2024).

10.1128/jvi.00640-24

26

Space-time reconstruction for lensless imaging using implicit neural representations

T. Chien, R. Cao, F. Liu, L. A. Kabuli, L. Waller, Optics Express, 32, 35725, (2024).

10.1364/oe.530480

27

Low-density diamondlike amorphous carbon at nanostructured metal-diamond interfaces

B. McBennett, Y. Esashi, N. W. Jenkins, A. Beardo, Y. Shao, E. E. Nelson, T. H. Culman, B. Abad, M. Tanksalvala, T. D. Frazer, S. Marks, W. Chao, S. Yazdi, J. L. Knobloch, H. C. Kapteyn, M. M. Murnane, Physical Review Materials, 8, 096001, (2024).

10.1103/physrevmaterials.8.096001

28

Structural Heterogeneity of the Rabies Virus Virion

X. Cai, K. Zhou, A. Alvarez-Cabrera, Z. Si, H. Wang, Y. He, C. Li, Z. Hong Zhou, Viruses, 16, 1447, (2024).

10.3390/v16091447

29

Low-Light Phase Retrieval With Implicit Generative Priors

R. Manekar, E. Negrini, M. Pham, D. Jacobs, J. Srivastava, S. J. Osher, J. Miao, IEEE Transactions on Image Processing, 33, 4728-4737, (2024).

10.1109/tip.2024.3445739

30

Atomic structures of a bacteriocin targeting Gram-positive bacteria

X. Cai, Y. He, I. Yu, A. Imani, D. Scholl, J. F. Miller, Z. Hong Zhou, Nature Communications, 15, 7057, (2024).

10.1038/s41467-024-51038-w

31

Quantitative Assessment of Collagen Remodeling during a Murine Pregnancy

J. C. Ramella-Roman, M. Mahendroo, C. Raoux, G. Latour, M. Schanne-Klein, ACS Photonics, 4c00337, (2024).

10.1021/acsphotonics.4c00337

32

Mapping Ferroelectric Fields Reveals the Origins of the Coercivity Distribution

H. Chan, S. S. Fields, Y. Chen, T. P. O’Neill, M. K. Lenox, W. A. Hubbard, J. F. Ihlefeld, B. C. Regan, ACS Nano, (2024).

10.1021/acsnano.4c04526

33

Tip-Enhanced Imaging and Control of Infrared Strong Light-Matter Interaction

Y. Wang, S. C. Johnson, N. Nookala, J. F. Klem, S. R. Turner, R. L. Puro, M. Hu, I. Brener, E. A. Muller, A. Belyanin, M. A. Belkin, M. B. Raschke, Laser & Photonics Reviews, 2301148, (2024).

10.1002/lpor.202301148

34

Three-dimensional structure of buried heterointerfaces revealed by multislice ptychography

C. M. O’Leary, H. Sha, J. Zhang, C. Su, S. Kahn, H. Jiang, A. Zettl, J. Ciston, J. Miao, Physical Review Applied, 22, 014016, (2024).

10.1103/physrevapplied.22.014016

35

Time-efficient filtering of imaging polarimetric data by checking physical realizability of experimental Mueller matrices

T. Novikova, A. Ovchinnikov, G. Pogudin, J. Ramella-Roman, Bioinformatics, 40, btae348, (2024).

10.1093/bioinformatics/btae348

36

Reduced-Dimensionality Al Nanocrystals: Nanowires, Nanobars, and Nanomoustaches

D. Solti, C. R. Jacobson, J. on Yates, B. Hammel, G. Naidu, C. E. Arndt, A. Bayles, Y. Yuan, P. Dhindsa, J. T. Luu, C. Farr, G. Wu, H. O. Everitt, A. Tsai, S. Yazdi, P. Nordlander, N. J. Halas, Nano Letters, 24, 6897-6905, (2024).

10.1021/acs.nanolett.4c00895

37

Anion and Cation Migration at 2D/3D Halide Perovskite Interfaces

R. F. Moral, C. R. Perini, T. Kodalle, A. Kim, F. Babbe, N. Harada, J. Hajhemati, P. Schulz, N. S. Ginsberg, S. Aloni, C. P. Schwartz, J. Correa-Baena, C. M. Sutter-Fella, ACS Energy Letters, 9, 2703-2716, (2024).

10.1021/acsenergylett.4c00728

38

High-harmonic spin-shearing interferometry for spatially resolved EUV magneto-optical spectroscopy

N. J. Brooks, K. M. Dorney, J. Ellis, A. E. Denton, C. Gentry, S. A. Ryan, Q. D. Nguyen, D. W. Morrill, H. C. Kapteyn, M. M. Murnane, Optics Express, 32, 19076, (2024).

10.1364/oe.521669

39

Long-Chain Lipids Facilitate Insertion of Large Nanoparticles into Membranes of Small Unilamellar Vesicles

A. Marzouq, L. Morgenstein, C. A. Huang-Zhu, S. Yudovich, A. Atkins, A. Grupi, R. C. Van Lehn, S. Weiss, Langmuir, 40, 10477-10485, (2024).

10.1021/acs.langmuir.3c03471

40

Structure-guided mutagenesis targeting interactions between pp150 tegument protein and small capsid protein identify five lethal and two live-attenuated HCMV mutants

A. Stevens, R. Cruz-Cosme, N. Armstrong, Q. Tang, Z. Hong Zhou, Virology, 596, 110115, (2024).

10.1016/j.virol.2024.110115

41

Real space iterative reconstruction for vector tomography (RESIRE-V)

M. Pham, X. Lu, A. Rana, S. Osher, J. Miao, Scientific Reports, 14, 9541, (2024).

10.1038/s41598-024-59140-1

42

RNA genome packaging and capsid assembly of virus visualized in host cells

X. Xia, P. Sung, M. W. Martynowycz, T. Gonen, P. Roy, Z. Hong Zhou, Cell, 187, 2236-2249.e17, (2024).

10.1016/j.cell.2024.03.007

43

Reciprocity relations in a biologically inspired nanomagnonic system with dipolar coupling

B. W. Zingsem, T. Feggeler, D. Spoddig, R. Meckenstock, M. Farle, M. Winklhofer, Applied Physics Letters, 124, 132405, (2024).

10.1063/5.0195215

44

High energy electron diffraction instrument with tunable camera length

P. P. Denham, Y. Y. Yang, V. V. Guo, A. A. Fisher, X. X. Shen, T. T. Xu, R. J. England, R. K. Li, P. P. Musumeci, Structural Dynamics, 11, 024302, (2024).

10.1063/4.0000240

45

Vector-based feedback of continuous wave radiofrequency compression cavity for ultrafast electron diffraction

T. M. Sutter, J. H. Lee, A. V. Kulkarni, P. Musumeci, A. Kogar, Structural Dynamics, 11, 024303, (2024).

10.1063/4.0000231

46

Vibrational Coupling Infrared Nanocrystallography

R. L. Puro, T. P. Gray, T. A. Kapfunde, G. B. Richter-Addo, M. B. Raschke, Nano Letters, 24, 1909-1915, (2024).

10.1021/acs.nanolett.3c03958

47

Speculum-free portable preterm imaging system

T. Boonya-ananta, M. Gonzalez, A. Ajmal, V. Du Le, E. DeHoog, M. J. Paidas, A. Jayakumar, J. C. Ramella-Roman, Journal of Biomedical Optics, 29, 052918, (2024).

10.1117/1.jbo.29.5.052918

48

Much more to explore with an oxidation state of nearly four: Pr valence instability in intermetallic m-Pr2Co3Ge5

T. M. Kyrk, E. R. Kennedy, J. Galeano-Cabral, G. T. McCandless, M. C. Scott, R. E. Baumbach, J. Y. Chan, Science Advances, 10, eadl2818, (2024).

10.1126/sciadv.adl2818

49

Exciton and biexciton transient absorption spectra of CdSe quantum dots with varying diameters

K. E. Shulenberger, S. J. Sherman, M. R. Jilek, H. R. Keller, L. M. Pellows, G. Dukovic, The Journal of Chemical Physics, 160, 014708, (2024).

10.1063/5.0179129

50

Optical nanoprobe imaging and spectroscopy

M. B. Raschke, M. Schubert, P. Narang, A. Paarmann, Applied Physics Letters, 123, 230401, (2023).

10.1063/5.0186788

Publications

STROBE Publications

2025