STROBE Publications

Showing publications 301 – 350 of 351

2018

301

Building atomic models based on near atomic resolution cryoEM maps with existing tools

I. Yu, L. Nguyen, J. Avaylon, K. Wang, M. Lai, Z. Hong Zhou, Journal of Structural Biology, 204, 313-318, (2018).

10.1016/j.jsb.2018.08.004

302

Nanoimaging and Control of Molecular Vibrations through Electromagnetically Induced Scattering Reaching the Strong Coupling Regime

E. A. Muller, B. Pollard, H. A. Bechtel, R. Adato, D. Etezadi, H. Altug, M. B. Raschke, ACS Photonics, 5, 3594-3600, (2018).

10.1021/acsphotonics.8b00425

303

Aberration recovery by imaging a weak diffuser

G. Gunjala, S. Sherwin, A. Shanker, L. Waller, Optics Express, 26, 21054, (2018).

10.1364/oe.26.021054

304

In Situ Structures of the Polymerase Complex and RNA Genome Show How Aquareovirus Transcription Machineries Respond to Uncoating

K. Ding, L. Nguyen, Z. Hong Zhou, Journal of Virology, 92, e00774-18, (2018).

10.1128/jvi.00774-18

305

Block Matching Local SVD Operator Based Sparsity and TV Regularization for Image Denoising

J. Liu, S. Osher, Journal of Scientific Computing, 78, 607-624, (2018).

10.1007/s10915-018-0785-8

306

Tunable Polaron Distortions Control the Extent of Halide Demixing in Lead Halide Perovskites

C. G. Bischak, A. B. Wong, E. Lin, D. T. Limmer, P. Yang, N. S. Ginsberg, The Journal of Physical Chemistry Letters, 9, 3998-4005, (2018).

10.1021/acs.jpclett.8b01512

307

Quantitative characterization of high temperature oxidation using electron tomography and energy-dispersive X-ray spectroscopy

J. Zhou, M. Taylor, G. A. Melinte, A. J. Shahani, C. C. Dharmawardhana, H. Heinz, P. W. Voorhees, J. H. Perepezko, K. Bustillo, P. Ercius, J. Miao, Scientific Reports, 8, 10239, (2018).

10.1038/s41598-018-28348-3

308

Super-Resolution Imaging of Clickable Graphene Nanoribbons Decorated with Fluorescent Dyes

D. Joshi, M. Hauser, G. Veber, A. Berl, K. Xu, F. R. Fischer, Journal of the American Chemical Society, 140, 9574-9580, (2018).

10.1021/jacs.8b04679

309

Compressed sensing FTIR nano-spectroscopy and nano-imaging

B. Kästner, F. Schmähling, A. Hornemann, G. Ulrich, A. Hoehl, M. Kruskopf, K. Pierz, M. B. Raschke, G. Wübbeler, C. Elster, Optics Express, 26, 18115, (2018).

10.1364/oe.26.018115

310

Accumulation of Dense Core Vesicles in Hippocampal Synapses Following Chronic Inactivity

C. Tao, Y. Liu, Z. Hong Zhou, P. Lau, G. Bi, Frontiers in Neuroanatomy, 12, (2018).

10.3389/fnana.2018.00048

311

Adaptive wavefront shaping for controlling nonlinear multimode interactions in optical fibres

O. Tzang, A. M. Caravaca-Aguirre, K. Wagner, R. Piestun, Nature Photonics, 12, 368–374, (2018).

10.1038/s41566-018-0167-7

312

Understanding Chemical Bonding in Alloys and the Representation in Atomistic Simulations

J. Liu, E. Tennessen, J. Miao, Y. Huang, J. M. Rondinelli, H. Heinz, The Journal of Physical Chemistry C, 122, 14996-15009, (2018).

10.1021/acs.jpcc.8b01891

313

Single-shot 3D coherent diffractive imaging of core-shell nanoparticles with elemental specificity

A. Pryor, A. Rana, R. Xu, J. A. Rodriguez, Y. Yang, M. Gallagher-Jones, H. Jiang, K. Kanhaiya, M. Nathanson, J. Park, S. Kim, S. Kim, D. Nam, Y. Yue, J. Fan, Z. Sun, B. Zhang, D. F. Gardner, C. Dias, Y. Joti, T. Hatsui, T. Kameshima, Y. Inubushi, K. Tono, J. Lee, M. Yabashi, C. Song, T. Ishikawa, H. C. Kapteyn, M. M. Murnane, H. Heinz, J. Miao, Scientific Reports, 8, 8284, (2018).

10.1038/s41598-018-26182-1

314

Structure of Telomerase with Telomeric DNA

J. Jiang, Y. Wang, L. Sušac, H. Chan, R. Basu, Z. Hong Zhou, J. Feigon, Cell, 173, 1179-1190.e13, (2018).

10.1016/j.cell.2018.04.038

315

Far Infrared Synchrotron Near-Field Nanoimaging and Nanospectroscopy

O. Khatib, H. A. Bechtel, M. C. Martin, M. B. Raschke, G. ce Carr, ACS Photonics, 5, 2773-2779, (2018).

10.1021/acsphotonics.8b00565

316

In situ coherent diffractive imaging

Y. Lo, L. Zhao, M. Gallagher-Jones, A. Rana, J. J. Lodico, W. Xiao, B. C. Regan, J. Miao, Nature Communications, 9, (2018).

10.1038/s41467-018-04259-9

317

Analysis of Global and Site-Specific Radiation Damage in Cryo-EM

J. Hattne, D. Shi, C. Glynn, C. Zee, M. Gallagher-Jones, M. W. Martynowycz, J. A. Rodriguez, T. Gonen, Structure, 26, 759-766.e4, (2018).

10.1016/j.str.2018.03.021

318

Students’ flexible use of ontologies and the value of tentative reasoning: Examples of conceptual understanding in three canonical topics of quantum mechanics

J. R. Hoehn, N. D. Finkelstein, Physical Review Physics Education Research, 14, 010122, (2018).

10.1103/physrevphyseducres.14.010122

319

Structure of the herpes simplex virus 1 capsid with associated tegument protein complexes

X. Dai, Z. Hong Zhou, Science, 360, eaao7298, (2018).

10.1126/science.aao7298

320

Atomic Structure of the E2 Inner Core of Human Pyruvate Dehydrogenase Complex

J. Jiang, F. L. Baiesc, Y. Hiromasa, X. Yu, W. Hui, X. Dai, T. E. Roche, Z. Hong Zhou, Biochemistry, 57, 2325-2334, (2018).

10.1021/acs.biochem.8b00357

321

Spectrally Resolved and Functional Super-resolution Microscopy via Ultrahigh-Throughput Single-Molecule Spectroscopy

R. Yan, S. Moon, S. J. Kenny, K. Xu, Accounts of Chemical Research, 51, 697-705, (2018).

10.1021/acs.accounts.7b00545

322

Long-Lived Correlated Triplet Pairs in a π-Stacked Crystalline Pentacene Derivative

B. D. Folie, J. B. Haber, S. Refaely-Abramson, J. B. Neaton, N. S. Ginsberg, Journal of the American Chemical Society, 140, 2326-2335, (2018).

10.1021/jacs.7b12662

323

Sub-ångström cryo-EM structure of a prion protofibril reveals a polar clasp

M. Gallagher-Jones, C. Glynn, D. R. Boyer, M. W. Martynowycz, E. Hernandez, J. Miao, C. Zee, I. V. Novikova, L. Goldschmidt, H. T. McFarlane, G. F. Helguera, J. E. Evans, M. R. Sawaya, D. Cascio, D. S. Eisenberg, T. Gonen, J. A. Rodriguez, Nature Structural & Molecular Biology, 25, 131-134, (2018).

10.1038/s41594-017-0018-0

324

Intercalation events visualized in single microcrystals of graphite

E. R. White, J. J. Lodico, B. C. Regan, Nature Communications, 1969, (2017).

10.1038/s41467-017-01787-8

325

Membrane insertion of—and membrane potential sensing by—semiconductor voltage nanosensors: Feasibility demonstration

K. Park, Y. Kuo, V. Shvadchak, A. Ingargiola, X. Dai, L. Hsiung, W. Kim, H. Zhou, P. Zou, A. J. Levine, J. Li, S. Weiss, Science Advances, 4, e1601453, (2018).

10.1126/sciadv.1601453

326

Nanoimaging of Electronic Heterogeneity in Bi2Se3 and Sb2Te3 Nanocrystals

X. Lu, O. Khatib, X. Du, J. Duan, W. Wei, X. Liu, H. A. Bechtel, F. D'Apuzzo, M. Yan, A. Buyanin, Q. Fu, J. Chen, M. Salmeron, J. Zeng, M. B. Raschke, P. Jiang, X. Bao, Advanced Electronic Materials, 4, 1700377, (2017).

10.1002/aelm.201700377

327

Thermometry of Silicon Nanoparticles

M. Mecklenburg, B. Zutter, B. C. Regan, Physical Review Applied, 9, 014005, (2018).

10.1103/physrevapplied.9.014005

328

Structure and mutagenesis reveal essential capsid protein interactions for KSHV replication

X. Dai, D. Gong, H. Lim, J. Jih, T. Wu, R. Sun, Z. Hong Zhou, Nature, 553, 521-525, (2018).

10.1038/nature25438

329

Multiple beam ptychography for large field-of-view, high throughput, quantitative phase contrast imaging

C. Bevis, R. Karl, J. Reichanadter, D. F. Gardner, C. Porter, E. Shanblatt, M. Tanksalvala, G. F. Mancini, H. Kapteyn, M. Murnane, D. Adams, Ultramicroscopy, 184, 164-171, (2018).

10.1016/j.ultramic.2017.08.018

2017

330

General-purpose, wide field-of-view reflection imaging with a tabletop 13  nm light source

C. L. Porter, M. Tanksalvala, M. Gerrity, G. Miley, X. Zhang, C. Bevis, E. Shanblatt, R. Karl, M. M. Murnane, D. E. Adams, H. C. Kapteyn, Optica, 4, 1552-1557, (2017).

10.1364/optica.4.001552

331

Structure of the yeast spliceosomal postcatalytic P complex

S. Liu, X. Li, L. Zhang, J. Jiang, R. C. Hill, Y. Cui, K. C. Hansen, Z. Hong Zhou, R. Zhao, Science, 358, 1278-1283, (2017).

10.1126/science.aar3462

332

Catastrophic disassembly of actin filaments via Mical-mediated oxidation

E. E. Grintsevich, P. Ge, M. R. Sawaya, H. Yesilyurt, J. R. Terman, Z. Hong Zhou, E. Reisler, Nature Communications, 8, (2017).

10.1038/s41467-017-02357-8

333

3D image scanning microscopy with engineered excitation and detection

C. Roider, R. Piestun, A. Jesacher, Optica, 4, 1373, (2017).

10.1364/optica.4.001373

334

A streaming multi-GPU implementation of image simulation algorithms for scanning transmission electron microscopy

A. Pryor, C. Ophus, J. Miao, Advanced Structural and Chemical Imaging, 3, 15, (2017).

10.1186/s40679-017-0048-z

335

Low Dimensional Manifold Model for Image Processing

S. Osher, Z. Shi, W. Zhu, SIAM Journal on Imaging Sciences, 10, 1669-1690, (2017).

10.1137/16m1058686

336

Conformation-Directed Formation of Self-Healing Diblock Copolypeptide Hydrogels via Polyion Complexation

Y. Sun, A. L. Wollenberg, T. O’Shea, Y. Cui, Z. Hong Zhou, M. V. Sofroniew, T. J. Deming, Journal of the American Chemical Society, 139, 15114-15121, (2017).

10.1021/jacs.7b08190

337

Noninvasive Cathodoluminescence-Activated Nanoimaging of Dynamic Processes in Liquids

C. G. Bischak, R. B. Wai, C. Cherqui, J. A. Busche, S. C. Quillin, C. L. Hetherington, Z. Wang, C. D. Aiello, D. G. Schlom, S. Aloni, D. nk Ogletree, D. J. Masiello, N. S. Ginsberg, ACS Nano, 11, 10583-10590, (2017).

10.1021/acsnano.7b06081

338

Resolving ultrafast exciton migration in organic solids at the nanoscale

S. B. Penwell, L. S. Ginsberg, R. Noriega, N. S. Ginsberg, Nature Materials, 16, 1136-1141, (2017).

10.1038/nmat4975

339

Atomic structure of the human cytomegalovirus capsid with its securing tegument layer of pp150

X. Yu, J. Jih, J. Jiang, Z. Hong Zhou, Science, 356, eaam6892, (2017).

10.1126/science.aam6892

340

Reliable computational design of biological-inorganic materials to the large nanometer scale using Interface-FF

C. C. Dharmawardhana, K. Kanhaiya, T. Lin, A. Garley, M. R. Knecht, J. Zhou, J. Miao, H. Heinz, Molecular Simulation, 43, 1394-1405, (2017).

10.1080/08927022.2017.1332414

341

Correlative cellular ptychography with functionalized nanoparticles at the Fe L-edge

M. Gallagher-Jones, C. Dias, A. Pryor, K. Bouchmella, L. Zhao, Y. Lo, M. Cardoso, D. Shapiro, J. Rodriguez, J. Miao, Scientific Reports, 4757, (2017).

10.1038/s41598-017-04784-5

342

Enhanced information content for three-dimensional localization and tracking using the double-helix point spread function with variable-angle illumination epifluorescence microscopy

D. Wang, A. Agrawal, R. Piestun, D. K. Schwartz, Applied Physics Letters, 110, 211107, (2017).

10.1063/1.4984133

343

GENFIRE: A generalized Fourier iterative reconstruction algorithm for high-resolution 3D imaging

A. Pryor, Y. Yang, A. Rana, M. Gallagher-Jones, J. Zhou, Y. Lo, G. Melinte, W. Chiu, J. A. Rodriguez, J. Miao, Scientific Reports, 7, 10409 , (2017).

10.1038/s41598-017-09847-1

344

Sub-wavelength coherent imaging of periodic samples using a 13.5 nm tabletop high harmonic light source

D. F. Gardner, M. Tanksalvala, E. R. Shanblatt, X. Zhang, B. R. Galloway, C. L. Porter, R. Karl Jr, C. Bevis, D. E. Adams, H. C. Kapteyn, M. M. Murnane, G. F. Mancini, Nature Photonics, 11, 259-263, (2017).

10.1038/nphoton.2017.33

345

Deciphering chemical order/disorder and material properties at the single-atom level

Y. Yang, C. Chen, M. C. Scott, C. Ophus, R. Xu, A. Pryor, L. Wu, F. Sun, W. Theis, J. Zhou, M. Eisenbach, P. C. Kent, R. F. Sabirianov, H. Zeng, P. Ercius, J. Miao, Nature, 542, 75-79, (2017).

10.1038/nature21042

346

Double-shot MeV electron diffraction and microscopy

P. P. Musumeci, D. D. Cesar, J. J. Maxson, Structural Dynamics, 4, 044025, (2017).

10.1063/1.4983390

2016

347

Corrigendum: CryoEM structure of the Methanospirillum hungatei archaellum reveals structural features distinct from the bacterial flagellum and type IV pilus

N. Poweleit, P. Ge, H. H. Nguyen, R. R. Ogorzalek Loo, R. P. Gunsalus, Z. Hong Zhou, Nature Microbiology, 2, 16264, (2016).

10.1038/nmicrobiol.2016.264

348

In situ structures of the genome and genome-delivery apparatus in a single-stranded RNA virus

X. Dai, Z. Li, M. Lai, S. Shu, Y. Du, Z. Hong Zhou, R. Sun, Nature, 541, 112-116, (2016).

10.1038/nature20589

349

Frontier methods in coherent X-ray diffraction for high-resolution structure determination

M. Gallagher-Jones, J. A. Rodriguez, J. Miao, Quarterly Reviews of Biophysics, 49, (2016).

10.1017/s0033583516000147

350

CryoEM structure of the Methanospirillum hungatei archaellum reveals structural features distinct from the bacterial flagellum and type IV pilus

N. Poweleit, P. Ge, H. H. Nguyen, R. R. Ogorzalek Loo, R. P. Gunsalus, Z. Hong Zhou, Nature Microbiology, 2, 16222, (2016).

10.1038/nmicrobiol.2016.222