STROBE Publications

Showing publications 301 – 350 of 412

2019

301

Oblique-plane single-molecule localization microscopy for tissues and small intact animals

J. Kim, M. Wojcik, Y. Wang, S. Moon, E. A. Zin, N. Marnani, Z. L. Newman, J. G. Flannery, K. Xu, X. Zhang, Nature Methods, 16, 853-857, (2019).

10.1038/s41592-019-0510-z

302

In situ structures of RNA-dependent RNA polymerase inside bluetongue virus before and after uncoating

Y. He, S. Shivakoti, K. Ding, Y. Cui, P. Roy, Z. Hong Zhou, Proceedings of the National Academy of Sciences, 116, 16535-16540, (2019).

10.1073/pnas.1905849116

303

Deconstructing Black physics identity: Linking individual and social constructs using the critical physics identity framework

S. Hyater-Adams, C. Fracchiolla, T. Williams, N. Finkelstein, K. Hinko, Physical Review Physics Education Research, 15, 020115, (2019).

10.1103/physrevphyseducres.15.020115

304

Light-Assisted Diazonium Functionalization of Graphene and Spatial Heterogeneities in Reactivity

Y. Li, W. Li, M. Wojcik, B. Wang, L. Lin, M. B. Raschke, K. Xu, The Journal of Physical Chemistry Letters, 10, 4788-4793, (2019).

10.1021/acs.jpclett.9b02225

305

Knife-edge based measurement of the 4D transverse phase space of electron beams with picometer-scale emittance

F. Ji, J. Navarro, P. Musumeci, D. B. Durham, A. M. Minor, D. Filippetto, Physical Review Accelerators and Beams, 15, 082801, (2019).

10.1103/physrevaccelbeams.22.082801

306

Data-driven challenges and opportunities in crystallography

C. Glynn, J. A. Rodriguez, Emerging Topics in Life Sciences, 3, 423-432, (2019).

10.1042/etls20180177

307

Speckle-structured illumination for 3D phase and fluorescence computational microscopy

L. Yeh, S. Chowdhury, N. A. Repina, L. Waller, Biomedical Optics Express, 10, 3635, (2019).

10.1364/boe.10.003635

308

Observing crystal nucleation in four dimensions using atomic electron tomography

J. Zhou, Y. Yang, Y. Yang, D. S. Kim, A. Yuan, X. Tian, C. Ophus, F. Sun, A. K. Schmid, M. Nathanson, H. Heinz, Q. An, H. Zeng, P. Ercius, J. Miao, Nature, 570, 500-503, (2019).

10.1038/s41586-019-1317-x

309

Improved Surface Functionalization and Characterization of Membrane-Targeted Semiconductor Voltage Nanosensors

J. Park, Y. Kuo, J. Li, Y. Huang, E. W. Miller, S. Weiss, The Journal of Physical Chemistry Letters, 10, 3906-3913, (2019).

10.1021/acs.jpclett.9b01258

310

Ultrasensitive Tip- and Antenna-Enhanced Infrared Nanoscopy of Protein Complexes

B. T. O’Callahan, M. Hentschel, M. B. Raschke, P. Z. El-Khoury, A. tt Lea, The Journal of Physical Chemistry C, 123, 17505-17509, (2019).

10.1021/acs.jpcc.9b05777

311

Advances in in situ nanomechanical testing

A. M. Minor, G. Dehm, MRS Bulletin, 44, 438-442, (2019).

10.1557/mrs.2019.127

312

Deep learning for single-shot autofocus microscopy

H. Pinkard, Z. Phillips, A. Babakhani, D. A. Fletcher, L. Waller, Optica, 6, 794, (2019).

10.1364/optica.6.000794

313

Direct observation of picosecond melting and disintegration of metallic nanoparticles

Y. Ihm, D. Cho, D. Sung, D. Nam, C. Jung, T. Sato, S. Kim, J. Park, S. Kim, M. Gallagher-Jones, Y. Kim, R. Xu, S. Owada, J. Shim, K. Tono, M. Yabashi, T. Ishikawa, J. Miao, D. Noh, C. Song, Nature Communications, 10, 2411, (2019).

10.1038/s41467-019-10328-4

314

Cryo-EM structures of herpes simplex virus type 1 portal vertex and packaged genome

Y. Liu, J. Jih, X. Dai, G. Bi, Z. ng Zhou, Nature, 570, 257-261, (2019).

10.1038/s41586-019-1248-6

315

Ultrafast Relativistic Electron Nanoprobes

F. F. Ji, D. B. Durham, A. M. Minor, P. P. Musumeci, J. G. Navarro, D. D. Filippetto, Communications Physics, 2, 54, (2019).

10.1038/s42005-019-0154-4

316

In situ structures of rotavirus polymerase in action and mechanism of mRNA transcription and release

K. Ding, C. C. Celma, X. Zhang, T. Chang, W. Shen, I. Atanasov, P. Roy, Z. Hong Zhou, Nature Communications, 10, 2216, (2019).

10.1038/s41467-019-10236-7

317

Elastin-Dependent Aortic Heart Valve Leaflet Curvature Changes During Cyclic Flexure

M. D. Tesfamariam, A. M. Mirza, D. Chaparro, A. Z. Ali, R. Montalvan, I. Saytashev, B. A. Gonzalez, A. Barreto, J. Ramella-Roman, J. D. Hutcheson, S. Ramaswamy, Bioengineering, 6, 39, (2019).

10.3390/bioengineering6020039

318

Spectral image scanning microscopy

F. Strasser, M. Offterdinger, R. Piestun, A. Jesacher, Biomedical Optics Express, 10, 2513, (2019).

10.1364/boe.10.002513

319

Moments reconstruction and local dynamic range compression of high order superresolution optical fluctuation imaging

X. Yi, S. Son, R. Ando, A. Miyawaki, S. Weiss, Biomedical Optics Express, 10, 2430, (2019).

10.1364/boe.10.002430

320

Information-rich localization microscopy through machine learning

T. Kim, S. Moon, K. Xu, Nature Communications, 10, 1996, (2019).

10.1038/s41467-019-10036-z

321

Investigating the dynamics of ontological reasoning across contexts in quantum physics

J. R. Hoehn, J. D. Gifford, N. D. Finkelstein, Physical Review Physics Education Research, 15, 010124, (2019).

10.1103/physrevphyseducres.15.010124

322

Structure of the human ClC-1 chloride channel

K. Wang, S. Preisler, L. Zhang, Y. Cui, J. Missel, C. Grønberg, K. Gotfryd, E. Lindahl, M. Andersson, K. Calloe, P. F. Egea, D. Klaerke, M. Pusch, P. Pedersen, Z. Hong Zhou, P. Gourdon, PLOS Biology, 17, e3000218, (2019).

10.1371/journal.pbio.3000218

323

A 3.8 Å resolution cryo-EM structure of a small protein bound to an imaging scaffold

Y. Liu, D. T. Huynh, T. O. Yeates, Nature Communications, 10, 1864, (2019).

10.1038/s41467-019-09836-0

324

Fostering sustainable improvements in science education: An analysis through four frames

D. L. Reinholz, C. Ngai, G. Quan, M. E. Pilgrim, J. C. Corbo, N. Finkelstein, Science Education, 103, 1125-1150, (2019).

10.1002/sce.21526

325

Advanced denoising for X-ray ptychography

H. Chang, P. Enfedaque, J. Zhang, J. Reinhardt, B. Enders, Y. Yu, D. Shapiro, C. G. Schroer, T. Zeng, S. Marchesini, Optics Express, 27, 10395, (2019).

10.1364/oe.27.010395

326

Recent advances in ultrafast X-ray sources

R. Schoenlein, T. Elsaesser, K. Holldack, Z. Huang, H. Kapteyn, M. Murnane, M. Woerner, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 377, 20180384, (2019).

10.1098/rsta.2018.0384

327

Infrared nanospectroscopic imaging in the rotating frame

S. C. Johnson, E. A. Muller, O. Khatib, E. A. Bonnin, A. C. Gagnon, M. B. Raschke, Optica, 6, 424, (2019).

10.1364/optica.6.000424

328

pH-dependent gating mechanism of the Helicobacter pylori urea channel revealed by cryo-EM

Y. Cui, K. Zhou, D. Strugatsky, Y. Wen, G. Sachs, Z. Hong Zhou, K. Munson, Science Advances, 5, eaav8423, (2019).

10.1126/sciadv.aav8423

329

Physics-based Learned Design: Optimized Coded-Illumination for Quantitative Phase Imaging

M. R. Kellman, E. Bostan, N. A. Repina, L. Waller, IEEE Transactions on Computational Imaging, 344-353, (2019).

10.1109/tci.2019.2905434

330

Optical phantoms for biomedical polarimetry: a review

J. Chue-Sang, M. Gonzalez, A. Pierre, M. Laughrey, I. Saytashev, T. Novikova, J. C. Ramella-Roman, Journal of Biomedical Optics, 24, 1, (2019).

10.1117/1.jbo.24.3.030901

331

Homochiral and racemic MicroED structures of a peptide repeat from the ice-nucleation protein InaZ

C. Zee, C. Glynn, M. Gallagher-Jones, J. Miao, C. G. Santiago, D. Cascio, T. Gonen, M. R. Sawaya, J. A. Rodriguez, IUCrJ, 6, 197-205, (2019).

10.1107/s2052252518017621

332

Atomic structures and deletion mutant reveal different capsid-binding patterns and functional significance of tegument protein pp150 in murine and human cytomegaloviruses with implications for therapeutic development

W. Liu, X. Dai, J. Jih, K. Chan, P. Trang, X. Yu, R. Balogun, Y. Mei, F. Liu, Z. Hong Zhou, PLOS Pathogens, 15, e1007615, (2019).

10.1371/journal.ppat.1007615

333

Excitation and Emission Transition Dipoles of Type-II Semiconductor Nanorods

S. Ghosh, A. M. Chizhik, G. Yang, N. Karedla, I. Gregor, D. Oron, S. Weiss, J. Enderlein, A. I. Chizhik, Nano Letters, 19, 1695-1700, (2019).

10.1021/acs.nanolett.8b04695

334

Atomic structure of the translation regulatory protein NS1 of bluetongue virus

A. Kerviel, P. Ge, M. Lai, J. Jih, M. Boyce, X. Zhang, Z. Hong Zhou, P. Roy, Nature Microbiology, 4, 837-845, (2019).

10.1038/s41564-019-0369-x

335

Two-photon PSF-engineered image scanning microscopy

O. Tzang, D. Feldkhun, A. Agrawal, A. Jesacher, R. Piestun, Optics Letters, 44, 895, (2019).

10.1364/ol.44.000895

336

Engineering Nanoscale Thermal Transport: Size- and Spacing-Dependent Cooling of Nanostructures

T. D. Frazer, J. L. Knobloch, K. M. Hoogeboom-Pot, D. Nardi, W. Chao, R. W. Falcone, M. M. Murnane, H. C. Kapteyn, J. N. Hernandez-Charpak, Physical Review Applied, 11, 024042, (2019).

10.1103/physrevapplied.11.024042

337

Focusability of laser pulses at petawatt transport intensities in thin-film compression

D. M. Farinella, J. J. Wheeler, A. E. Hussein, J. J. Nees, M. M. Stanfield, N. N. Beier, Y. Y. Ma, G. G. Cojocaru, R. R. Ungureanu, M. M. Pittman, J. J. Demailly, E. E. Baynard, R. R. Fabbri, M. M. Masruri, R. R. Secareanu, A. A. Naziru, R. R. Dabu, A. A. Maksimchuk, K. K. Krushelnick, D. D. Ros, G. G. Mourou, T. T. Tajima, F. F. Dollar, Journal of the Optical Society of America B, 36, A28, (2018).

10.1364/josab.36.000a28

338

Temporal magnification for streaked ultrafast electron diffraction and microscopy

D. D. Cesar, P. P. Musumeci, Ultramicroscopy, 199, 1-6, (2019).

10.1016/j.ultramic.2019.01.003

339

Generalized proximal smoothing (GPS) for phase retrieval

M. Pham, P. Yin, A. Rana, S. Osher, J. Miao, Optics Express, 17, 2792-2808, (2019).

10.1364/oe.27.002792

340

Nanoscale mosaicity revealed in peptide microcrystals by scanning electron nanodiffraction

M. Gallagher-Jones, C. Ophus, K. C. Bustillo, D. R. Boyer, O. Panova, C. Glynn, C. Zee, J. Ciston, K. Mancia, A. M. Minor, J. A. Rodriguez, Communications Biology, 2, 26, (2019).

10.1038/s42003-018-0263-8

341

Focusing and scanning through scattering media in microseconds

D. Feldkhun, O. Tzang, K. H. Wagner, R. Piestun, Optica, 6, 72, (2019).

10.1364/optica.6.000072

342

Blended coarse gradient descent for full quantization of deep neural networks

P. Yin, S. Zhang, J. Lyu, S. Osher, Y. Qi, J. Xin, Research in the Mathematical Sciences, 6, 14, (2019).

10.1007/s40687-018-0177-6

343

Atomic structures of enterovirus D68 in complex with two monoclonal antibodies define distinct mechanisms of viral neutralization

Q. Zheng, R. Zhu, L. Xu, M. He, X. Yan, D. Liu, Z. Yin, Y. Wu, Y. Li, L. Yang, W. Hou, S. Li, Z. Li, Z. Chen, Z. Li, H. Yu, Y. Gu, J. Zhang, T. S. Baker, Z. Hong Zhou, B. S. Graham, T. Cheng, S. Li, N. Xia, Nature Microbiology, 4, 124-133, (2018).

10.1038/s41564-018-0275-7

2018

344

Ptychographic amplitude and phase reconstruction of bichromatic vortex beams

Y. Esashi, C. T. Liao, B. Wang, N. Brooks, K. M. Dorney, C. Hernández-García, H. Kapteyn, D. Adams, M. Murnane, Optics Express, 26, 34007, (2018).

10.1364/oe.26.034007

345

Quantitative differential phase contrast (DPC) microscopy with computational aberration correction

M. Chen, Z. F. Phillips, L. Waller, Optics Express, 26, 32888-32899, (2018).

10.1364/oe.26.032888

346

Different functional states of fusion protein gB revealed on human cytomegalovirus by cryo electron tomography with Volta phase plate

Z. Si, J. Zhang, S. Shivakoti, I. Atanasov, C. Tao, W. H. Hui, K. Zhou, X. Yu, W. Li, M. Luo, G. Bi, Z. Hong Zhou, PLOS Pathogens, 14, e1007452, (2018).

10.1371/journal.ppat.1007452

347

Atomic-Scale Structure and Stress Release Mechanism in Core–Shell Nanoparticles

M. Nathanson, K. Kanhaiya, A. Pryor, J. Miao, H. Heinz, ACS Nano, 12, 12296 - 12304, (2018).

10.1021/acsnano.8b06118

348

Correlative 3D x-ray fluorescence and ptychographic tomography of frozen-hydrated green algae

J. Deng, Y. Lo, M. Gallagher-Jones, S. Chen, A. Pryor, Q. Jin, Y. Hong, Y. G. Nashed, S. Vogt, J. Miao, C. Jacobsen, Science Advances, 4, eaau4548, (2018).

10.1126/sciadv.aau4548

349

STEM Imaging with Beam-Induced Hole and Secondary Electron Currents

W. A. Hubbard, M. Mecklenburg, H. Chan, B. C. Regan, Physical Review Applied, 10, (2018).

10.1103/physrevapplied.10.044066

350

Full-field imaging of thermal and acoustic dynamics in an individual nanostructure using tabletop high harmonic beams

R. M. Karl, G. F. Mancini, J. L. Knobloch, T. D. Frazer, J. N. Hernandez-Charpak, B. Abad, D. F. Gardner, E. R. Shanblatt, M. Tanksalvala, C. L. Porter, C. S. Bevis, D. E. Adams, H. C. Kapteyn, M. M. Murnane, Science Advances, 4, eaau4295, (2018).

10.1126/sciadv.aau4295