STROBE Publications

Showing publications 201 – 250 of 438

2021

201

Introduction of a 3 × 4 Mueller matrix decomposition method

M. Gonzalez, R. Ossikovski, T. Novikova, J. Ramella-Roman, Journal of Physics D: Applied Physics, 54, 424005, (2021).

10.1088/1361-6463/ac1622

202

Mueller matrix imaging for collagen scoring in mice model of pregnancy

H. Lee, I. Saytashev, V. Du Le, M. Mahendroo, J. Ramella-Roman, T. Novikova, Scientific Reports, 11, 15621, (2021).

10.1038/s41598-021-95020-8

203

Crystallization by Amorphous Particle Attachment: On the Evolution of Texture

V. Schoeppler, D. Stier, R. J. Best, C. Song, J. Turner, B. H. Savitzky, C. Ophus, M. A. Marcus, S. Zhao, K. Bustillo, I. Zlotnikov, Advanced Materials, 2101358, (2021).

10.1002/adma.202101358

204

A General and Predictive Understanding of Thermal Transport from 1D- and 2D-Confined Nanostructures: Theory and Experiment

A. Beardo, J. L. Knobloch, L. Sendra, J. Bafaluy, T. D. Frazer, W. Chao, J. N. Hernandez-Charpak, H. C. Kapteyn, B. Abad, M. M. Murnane, F. er Alvarez, J. Camacho, ACS Nano, 15, 13019-13030, (2021).

10.1021/acsnano.1c01946

205

Multidimensional Nano-Imaging of Structure, Coupling, and Disorder in Molecular Materials

S. A. Dönges, R. Peyton Cline, S. E. Zeltmann, J. Nishida, B. Metzger, A. M. Minor, J. Eaves, M. B. Raschke, Nano Letters, 21, 6463-6470, (2021).

10.1021/acs.nanolett.1c01369

206

Structure of the trypanosome paraflagellar rod and insights into non-planar motility of eukaryotic cells

J. Zhang, H. Wang, S. Imhof, X. Zhou, S. Liao, I. Atanasov, W. Hui, K. Hill, Z. Hong Zhou, Cell Discovery, 7, (2021).

10.1038/s41421-021-00281-2

207

Asymmetric reconstruction of mammalian reovirus reveals interactions among RNA, transcriptional factor mu 2 and capsid proteins

M. Pan, A. L. Alvarez-Cabrera, J. S. Kang, L. Wang, C. Fan, Z. Hong Zhou, Nature Communications, 12, 4176, (2021).

10.1038/s41467-021-24455-4

208

Ultrafast optical melting of trimer superstructure in layered 1T′-TaTe2

K. M. Siddiqui, D. B. Durham, F. Cropp, C. Ophus, S. Rajpurohit, Y. Zhu, J. D. Carlström, C. Stavrakas, Z. Mao, A. Raja, P. Musumeci, L. Z. Tan, A. M. Minor, D. Filippetto, R. A. Kaindl, Communications Physics, 4, (2021).

10.1038/s42005-021-00650-z

209

2D Vibrational Exciton Nanoimaging of Domain Formation in Self-Assembled Monolayers

T. P. Gray, J. Nishida, S. C. Johnson, M. B. Raschke, Nano Letters, 21, 5754-5759, (2021).

10.1021/acs.nanolett.1c01515

210

Untrained networks for compressive lensless photography

K. Monakhova, V. Tran, G. Kuo, L. Waller, Optics Express, 29, 20913-20929, (2021).

10.1364/oe.424075

211

Persistent and partially mobile oxygen vacancies in Li-rich layered oxides

P. M. Csernica, S. S. Kalirai, W. E. Gent, K. Lim, Y. Yu, Y. Liu, S. Ahn, E. Kaeli, X. Xu, K. H. Stone, A. F. Marshall, R. Sinclair, D. A. Shapiro, M. F. Toney, W. C. Chueh, Nature Energy, (2021).

10.1038/s41560-021-00832-7

212

Phase-contrast imaging of multiply-scattering extended objects at atomic resolution by reconstruction of the scattering matrix

P. M. Pelz, H. G. Brown, S. Stonemeyer, S. D. Findlay, A. Zettl, P. Ercius, Y. Zhang, J. Ciston, M. C. Scott, C. Ophus, Physical Review Research, 3, 023159, (2021).

10.1103/physrevresearch.3.023159

213

Applying a mathematical sense-making framework to student work and its potential for curriculum design

J. D. Gifford, N. D. Finkelstein, Physical Review Physics Education Research, 17, 010138 , (2021).

10.1103/physrevphyseducres.17.010138

214

Influence of surface and interface roughness on X-ray and extreme ultraviolet reflectance: A comparative numerical study

Y. Esashi, M. Tanksalvala, Z. Zhang, N. W. Jenkins, H. C. Kapteyn, M. M. Murnane, OSA Continuum, 4, 1497-1518, (2021).

10.1364/osac.422924

215

Correlative nano-spectroscopic imaging of heterogeneity in migrated petroleum in unconventional reservoir pores

R. E. Simon, S. C. Johnson, O. Khatib, M. B. Raschke, D. A. Budd, Fuel, 100, 120836, (2021).

10.1016/j.fuel.2021.120836

216

4D-STEM of Beam-Sensitive Materials

K. C. Bustillo, S. E. Zeltmann, M. Chen, J. Donohue, J. Ciston, C. Ophus, A. M. Minor, Accounts of Chemical Research, (2021).

10.1021/acs.accounts.1c00073

217

Structures of telomerase at several steps of telomere repeat synthesis

Y. He, Y. Wang, B. Liu, C. Helmling, L. Sušac, R. Cheng, Z. Hong Zhou, J. Feigon, Nature, 593, 454-459, (2021).

10.1038/s41586-021-03529-9

218

Extreme mixing in nanoscale transition metal alloys

Y. Yao, Z. Huang, L. A. Hughes, J. Gao, T. Li, D. Morris, S. Zeltmann, B. H. Savitzky, C. Ophus, Y. Zou Finfrock, Q. Dong, M. Jiao, Y. Mao, M. Chi, P. Zhang, J. Li, A. Minor, R. Shahbazian-Yassar, L. Hu, Matter, 4, 2340-2353, (2021).

10.1016/j.matt.2021.04.014

219

Tunable mode control through myriad-mode fibers

S. Singh, S. Labouesse, R. Piestun, Journal of Lightwave Technology, 39, 2961-2970, (2021).

10.1109/jlt.2021.3057615

220

Setting Bounds on Entangled Two-Photon Absorption Cross Sections in Common Fluorophores

K. M. Parzuchowski, A. Mikhaylov, M. D. Mazurek, R. N. Wilson, D. J. Lum, T. Gerrits, C. H. Camp, M. J. Stevens, R. Jimenez, Physical Review Applied, 15, 044012 , (2021).

10.1103/physrevapplied.15.044012

221

Auto-detection of cervical collagen and elastin in Mueller matrix polarimetry microscopic images using K-NN and semantic segmentation classification

C. Roa, V. N. Du Le, M. Mahendroo, I. Saytashev, J. C. Ramella-Roman, Biomedical Optics Express, 12, 2236, (2021).

10.1364/boe.420079

222

Differential electron yield imaging with STXM

W. A. Hubbard, J. J. Lodico, X. Ling, B. T. Zutter, Y. Yu, D. A. Shapiro, B. C. Regan, Ultramicroscopy, 222, 113198, (2021).

10.1016/j.ultramic.2020.113198

223

Atomic Structure of the Trichomonas vaginalis Double-Stranded RNA Virus 2

A. Stevens, K. Muratore, Y. Cui, P. Johnson, Z. Hong Zhou, mBio, 12, (2021).

10.1128/mbio.02924-20

224

Millijoule few-cycle pulses from staged compression for strong and high field science

M. Stanfield, N. F. Beier, S. Hakimi, H. Allison, D. Farinella, A. E. Hussein, T. Tajima, F. Dollar, Optics Express, 29, 9123, (2021).

10.1364/oe.417404

225

Pycro-Manager: open-source software for customized and reproducible microscope control

H. Pinkard, N. Stuurman, I. E. Ivanov, N. M. Anthony, W. Ouyang, B. Li, B. Yang, M. A. Tsuchida, B. Chhun, G. Zhang, R. Mei, M. Anderson, D. P. Shepherd, I. Hunt-Isaak, R. L. Dunn, W. Jahr, S. Kato, L. A. Royer, J. R. Thiagarajah, K. W. Eliceiri, E. Lundberg, S. B. Mehta, L. Waller, Nature Methods, 18, 226-228, (2021).

10.1038/s41592-021-01087-6

226

Determining the three-dimensional atomic structure of an amorphous solid

Y. Yang, J. Zhou, F. Zhu, Y. Yuan, . J. Chang, D. S. Kim, M. Pham, A. Rana, X. Tian, Y. Yao, S. J. Osher, A. K. Schmid, L. Hu, P. Ercius, J. Miao, Nature, 592, 60-64, (2021).

10.1038/s41586-021-03354-0

227

Space-Charge Aberrations in Single-Shot Time-Resolved Transmission Electron Microscopy

P. P. Denham, P. P. Musumeci, Physical Review Applied, 15, 024050 , (2021).

10.1103/physrevapplied.15.024050

228

Probing electronic structure in berkelium and californium via an electron microscopy nanosampling approach

A. Müller, G. P. Deblonde, P. Ercius, S. E. Zeltmann, R. J. Abergel, A. M. Minor, Nature Communications, 12, 948, (2021).

10.1038/s41467-021-21189-1

229

Coherent Fourier scatterometry using orbital angular momentum beams for defect detection

B. Wang, M. Tanksalvala, Z. Zhang, Y. Esashi, N. W. Jenkins, M. M. Murnane, H. C. Kapteyn, C. Liao, Optics Express, 29, 3342-3358, (2021).

10.1364/oe.414584

230

Nondestructive, high-resolution, chemically specific 3D nanostructure characterization using phase-sensitive EUV imaging reflectometry

M. Tanksalvala, C. L. Porter, Y. Esashi, B. Wang, N. W. Jenkins, Z. Zhang, G. P. Miley, J. L. Knobloch, B. McBennett, N. Horiguchi, S. Yazdi, J. Zhou, M. N. Jacobs, C. S. Bevis, R. M. Karl, P. Johnsen, D. Ren, L. Waller, D. E. Adams, S. L. Cousin, C. Liao, J. Miao, M. Gerrity, H. C. Kapteyn, M. M. Murnane, Science Advances, 7, eabd9667, (2021).

10.1126/sciadv.abd9667

231

X-ray linear dichroic ptychography

Y. Lo, J. Zhou, A. Rana, D. Morrill, C. Gentry, B. Enders, Y. Yu, C. Sun, D. A. Shapiro, R. W. Falcone, H. C. Kapteyn, M. M. Murnane, P. A. Gilbert, J. Miao, Proceedings of the National Academy of Sciences, e2019068118, (2021).

10.1073/pnas.2019068118

232

Facile, Electrochemical Chlorination of Graphene from an Aqueous NaCl Solution

W. Li, Y. Li, K. Xu, Nano Letters, 21, 1150-1155, (2021).

10.1021/acs.nanolett.0c04641

233

4D Imaging of ZnO-Coated Nanoporous Al2O3 Aerogels by Chemically Sensitive Ptychographic Tomography: Implications for Designer Catalysts

H. Yuan, H. Yuan, T. Casagrande, D. Shapiro, Y. Yu, B. Enders, J. I. Lee, A. van Buuren, M. M. Biener, S. A. Gammon, T. F. Baumann, A. P. Hitchcock, ACS Applied Nano Materials, 4, 621-632, (2021).

10.1021/acsanm.0c02924

234

Laplacian smoothing stochastic gradient markov chain monte carlo

B. Wang, D. Zou, Q. Gu, S. J. Osher, SIAM Journal on Scientific Computing, 43, A26-A53, (2021).

10.1137/19m1294356

2020

235

Ab Initio Determination of Peptide Structures by MicroED

C. Zee, A. Saha, M. R. Sawaya, J. A. Rodriguez, cryoEM, 2215, 329-348, (2020).

10.1007/978-1-0716-0966-8_17

236

An ultrahigh-resolution soft x-ray microscope for quantitative analysis of chemically heterogeneous nanomaterials

D. A. Shapiro, S. Babin, R. S. Celestre, W. Chao, R. P. Conley, P. Denes, B. Enders, P. Enfedaque, S. James, J. M. Joseph, H. Krishnan, S. Marchesini, K. Muriki, K. Nowrouzi, S. R. Oh, H. Padmore, T. Warwick, L. Yang, V. V. Yashchuk, Y. Yu, J. Zhao, Science Advances, 6, eabc4904, (2020).

10.1126/sciadv.abc4904

237

Impact of a course transformation on students’ reasoning about measurement uncertainty

B. Pollard, A. Werth, R. Hobbs, H. J. Lewandowski, Physical Review Physics Education Research, 16, 020160, (2020).

10.1103/physrevphyseducres.16.020160

238

Refining a model for understanding and characterizing instructor pedagogy in informal physics learning environments

M. B. Bennett, B. Fiedler, N. D. Finkelstein, Physical Review Physics Education Research, 16, 020137, (2020).

10.1103/physrevphyseducres.16.020137

239

Smart Scattering Scanning Near-Field Optical Microscopy

S. Labouesse, S. C. Johnson, H. A. Bechtel, M. B. Raschke, R. Piestun, ACS Photonics, 7, 3346-3352, (2020).

10.1021/acsphotonics.0c00553

240

A review of polarization-based imaging technologies for clinical and preclinical applications

J. Ramella-Roman, I. Saytashev, M. Piccini, Journal of Optics, 22, 123001, (2020).

10.1088/2040-8986/abbf8a

241

Mesophasic organization of GABAA receptors in hippocampal inhibitory synapses

Y. Liu, C. Tao, X. Zhang, W. Xia, D. Shi, L. Qi, C. Xu, R. Sun, X. Li, P. Lau, Z. Hong Zhou, G. Bi, Nature Neuroscience, 1589-1596, (2020).

10.1038/s41593-020-00729-w

242

Ptychographic atomic electron tomography: Towards three-dimensional imaging of individual light atoms in materials

D. J. Chang, D. S. Kim, A. Rana, X. Tian, J. Zhou, P. Ercius, J. Miao, Physical Review B, 102, 174101, (2020).

10.1103/physrevb.102.174101

243

Depth-resolved Mueller matrix polarimetry microscopy of the rat cornea

V. N. Du Le, I. Saytashev, S. Saha, P. F. Lopez, M. Laughrey, J. C. Ramella-Roman, Biomedical Optics Express, 5982, (2020).

10.1364/boe.402201

244

Structures from the Mesophase: MicroED Targets Crystals Extracted from LCP

M. Gallagher-Jones, J. A. Rodriguez, Structure, 28, 1084-1086, (2020).

10.1016/j.str.2020.09.005

245

Spectral DiffuserCam: lensless snapshot hyperspectral imaging with a spectral filter array

K. Monakhova, K. Yanny, N. Aggarwal, L. Waller, Optica, 7, 1298-1307, (2020).

10.1364/optica.397214

246

A Calcium Sensor Discovered in Bluetongue Virus Nonstructural Protein 2 Is Critical for Virus Replication

S. Rahman, A. Kerviel, B. Mohl, Y. He, Z. Hong Zhou, P. Roy, Journal of Virology, (2020).

10.1128/jvi.01099-20

247

Memory-Efficient Learning for Large-Scale Computational Imaging

M. Kellman, K. Zhang, E. Markley, J. Tamir, E. Bostan, M. Lustig, L. Waller, IEEE Transactions on Computational Imaging, 6, 1403-1414, (2020).

10.1109/tci.2020.3025735

248

Categorical framework for mathematical sense making in physics

J. D. Gifford, N. D. Finkelstein, Physical Review Physics Education Research, 16, 020121, (2020).

10.1103/physrevphyseducres.16.020121

249

An ultra-compact x-ray free-electron laser

J. Rosenzweig, N. Majernik, R. Robles, G. Andonian, O. Camacho, A. Fukasawa, A. Kogar, G. Lawler, J. Miao, P. Musumeci, B. Naranjo, Y. Sakai, R. Candler, B. Pound, C. Pellegrini, C. Emma, A. Halavanau, J. Hastings, Z. Li, M. Nasr, S. Tantawi, P. P. Anisimov, B. Carlsten, F. Krawczyk, E. Simakov, L. Faillace, M. Ferrario, B. Spataro, S. Karkare, J. Maxson, Y. Ma, J. Wurtele, A. Murokh, A. Zholents, A. Cianchi, D. Cocco, S. van der Geer, New Journal of Physics, 093067, (2020).

10.1088/1367-2630/abb16c

250

Process of transforming of an introductory mechanics lab course at Fort Lewis College

A. Werth, H. J. Lewandowski, 2020 Physics Education Research Conference Proceedings, (2020).

10.1119/perc.2020.pr.werth