STROBE Publications

Showing publications 151 – 200 of 269

2019

151

Learned reconstructions for practical mask-based lensless imaging

K. Monakhova, J. Yurtsever, G. Kuo, N. Antipa, K. Yanny, L. Waller, Optics Express, 27, 28075, (2019).

10.1364/oe.27.028075

152

Characterization of Reactive Organometallic Species via MicroED

C. G. Jones, M. Asay, L. Kim, J. F. Kleinsasser, A. Saha, T. J. Fulton, K. R. Berkley, D. Cascio, A. G. Malyutin, M. P. Conley, B. M. Stoltz, V. Lavallo, J. A. Rodríguez, H. M. Nelson, ACS Central Science, 5, 1507-1513, (2019).

10.1021/acscentsci.9b00403

153

Multimodal x-ray and electron microscopy of the Allende meteorite

Y. Lo, C. Liao, J. Zhou, A. Rana, C. S. Bevis, G. Gui, B. Enders, K. M. Cannon, Y. Yu, R. Celestre, K. Nowrouzi, D. Shapiro, H. Kapteyn, R. Falcone, C. Bennett, M. Murnane, J. Miao, Science Advances, 5, eaax3009, (2019).

10.1126/sciadv.aax3009

154

DNA-Packing Portal and Capsid-Associated Tegument Complexes in the Tumor Herpesvirus KSHV

D. Gong, X. Dai, J. Jih, Y. Liu, G. Bi, R. Sun, Z. Hong Zhou, Cell, 178, 1329-1343.e12, (2019).

10.1016/j.cell.2019.07.035

155

A unified mechanism for intron and exon definition and back-splicing

X. Li, S. Liu, L. Zhang, A. Issaian, R. C. Hill, S. Espinosa, S. Shi, Y. Cui, K. Kappel, R. Das, K. C. Hansen, Z. Hong Zhou, R. Zhao, Nature, 573, 375-380, (2019).

10.1038/s41586-019-1523-6

156

CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation

S. Wongpalee, S. Liu, J. Gallego-Bartolomé, A. Leitner, R. Aebersold, W. Liu, L. Yen, M. A. Nohales, P. Kuo, A. A. Vashisht, J. A. Wohlschlegel, S. Feng, S. A. Kay, Z. Hong Zhou, S. E. Jacobsen, Nature Communications, 10, 3916, (2019).

10.1038/s41467-019-11759-9

157

Wavefront shaping in complex media with a 350 kHz modulator via a 1D-to-2D transform

O. Tzang, E. Niv, S. Singh, S. Labouesse, G. Myatt, R. Piestun, Nature Photonics, 13, 788-793, (2019).

10.1038/s41566-019-0503-6

158

Oblique-plane single-molecule localization microscopy for tissues and small intact animals

J. Kim, M. Wojcik, Y. Wang, S. Moon, E. A. Zin, N. Marnani, Z. L. Newman, J. G. Flannery, K. Xu, X. Zhang, Nature Methods, 16, 853-857, (2019).

10.1038/s41592-019-0510-z

159

Deconstructing Black physics identity: Linking individual and social constructs using the critical physics identity framework

S. Hyater-Adams, C. Fracchiolla, T. Williams, N. Finkelstein, K. Hinko, Physical Review Physics Education Research, 15, 020115, (2019).

10.1103/physrevphyseducres.15.020115

160

In situ structures of RNA-dependent RNA polymerase inside bluetongue virus before and after uncoating

Y. He, S. Shivakoti, K. Ding, Y. Cui, P. Roy, Z. Hong Zhou, Proceedings of the National Academy of Sciences, 116, 16535-16540, (2019).

10.1073/pnas.1905849116

161

Light-Assisted Diazonium Functionalization of Graphene and Spatial Heterogeneities in Reactivity

Y. Li, W. Li, M. Wojcik, B. Wang, L. Lin, M. B. Raschke, K. Xu, The Journal of Physical Chemistry Letters, 10, 4788-4793, (2019).

10.1021/acs.jpclett.9b02225

162

Knife-edge based measurement of the 4D transverse phase space of electron beams with picometer-scale emittance

F. Ji, J. Navarro, P. Musumeci, D. B. Durham, A. M. Minor, D. Filippetto, Physical Review Accelerators and Beams, 15, 082801, (2019).

10.1103/physrevaccelbeams.22.082801

163

Data-driven challenges and opportunities in crystallography

C. Glynn, J. A. Rodriguez, Emerging Topics in Life Sciences, 3, 423-432, (2019).

10.1042/etls20180177

164

Speckle-structured illumination for 3D phase and fluorescence computational microscopy

L. Yeh, S. Chowdhury, N. A. Repina, L. Waller, Biomedical Optics Express, 10, 3635, (2019).

10.1364/boe.10.003635

165

Observing crystal nucleation in four dimensions using atomic electron tomography

J. Zhou, Y. Yang, Y. Yang, D. S. Kim, A. Yuan, X. Tian, C. Ophus, F. Sun, A. K. Schmid, M. Nathanson, H. Heinz, Q. An, H. Zeng, P. Ercius, J. Miao, Nature, 570, 500-503, (2019).

10.1038/s41586-019-1317-x

166

Improved Surface Functionalization and Characterization of Membrane-Targeted Semiconductor Voltage Nanosensors

J. Park, Y. Kuo, J. Li, Y. Huang, E. W. Miller, S. Weiss, The Journal of Physical Chemistry Letters, 10, 3906-3913, (2019).

10.1021/acs.jpclett.9b01258

167

Ultrasensitive Tip- and Antenna-Enhanced Infrared Nanoscopy of Protein Complexes

B. T. O’Callahan, M. Hentschel, M. B. Raschke, P. Z. El-Khoury, A. tt Lea, The Journal of Physical Chemistry C, 123, 17505-17509, (2019).

10.1021/acs.jpcc.9b05777

168

Advances in in situ nanomechanical testing

A. M. Minor, G. Dehm, MRS Bulletin, 44, 438-442, (2019).

10.1557/mrs.2019.127

169

Deep learning for single-shot autofocus microscopy

H. Pinkard, Z. Phillips, A. Babakhani, D. A. Fletcher, L. Waller, Optica, 6, 794, (2019).

10.1364/optica.6.000794

170

Direct observation of picosecond melting and disintegration of metallic nanoparticles

Y. Ihm, D. Cho, D. Sung, D. Nam, C. Jung, T. Sato, S. Kim, J. Park, S. Kim, M. Gallagher-Jones, Y. Kim, R. Xu, S. Owada, J. Shim, K. Tono, M. Yabashi, T. Ishikawa, J. Miao, D. Noh, C. Song, Nature Communications, 10, 2411, (2019).

10.1038/s41467-019-10328-4

171

Cryo-EM structures of herpes simplex virus type 1 portal vertex and packaged genome

Y. Liu, J. Jih, X. Dai, G. Bi, Z. ng Zhou, Nature, 570, 257-261, (2019).

10.1038/s41586-019-1248-6

172

Ultrafast Relativistic Electron Nanoprobes

F. F. Ji, D. B. Durham, A. M. Minor, P. P. Musumeci, J. G. Navarro, D. D. Filippetto, Communications Physics, 2, 54, (2019).

10.1038/s42005-019-0154-4

173

In situ structures of rotavirus polymerase in action and mechanism of mRNA transcription and release

K. Ding, C. C. Celma, X. Zhang, T. Chang, W. Shen, I. Atanasov, P. Roy, Z. Hong Zhou, Nature Communications, 10, 2216, (2019).

10.1038/s41467-019-10236-7

174

Elastin-Dependent Aortic Heart Valve Leaflet Curvature Changes During Cyclic Flexure

M. D. Tesfamariam, A. M. Mirza, D. Chaparro, A. Z. Ali, R. Montalvan, I. Saytashev, B. A. Gonzalez, A. Barreto, J. Ramella-Roman, J. D. Hutcheson, S. Ramaswamy, Bioengineering, 6, 39, (2019).

10.3390/bioengineering6020039

175

Spectral image scanning microscopy

F. Strasser, M. Offterdinger, R. Piestun, A. Jesacher, Biomedical Optics Express, 10, 2513, (2019).

10.1364/boe.10.002513

176

Moments reconstruction and local dynamic range compression of high order superresolution optical fluctuation imaging

X. Yi, S. Son, R. Ando, A. Miyawaki, S. Weiss, Biomedical Optics Express, 10, 2430, (2019).

10.1364/boe.10.002430

177

Information-rich localization microscopy through machine learning

T. Kim, S. Moon, K. Xu, Nature Communications, 10, 1996, (2019).

10.1038/s41467-019-10036-z

178

Investigating the dynamics of ontological reasoning across contexts in quantum physics

J. R. Hoehn, J. D. Gifford, N. D. Finkelstein, Physical Review Physics Education Research, 15, 010124, (2019).

10.1103/physrevphyseducres.15.010124

179

Structure of the human ClC-1 chloride channel

K. Wang, S. Preisler, L. Zhang, Y. Cui, J. Missel, C. Grønberg, K. Gotfryd, E. Lindahl, M. Andersson, K. Calloe, P. F. Egea, D. Klaerke, M. Pusch, P. Pedersen, Z. Hong Zhou, P. Gourdon, PLOS Biology, 17, e3000218, (2019).

10.1371/journal.pbio.3000218

180

A 3.8 Å resolution cryo-EM structure of a small protein bound to an imaging scaffold

Y. Liu, D. T. Huynh, T. O. Yeates, Nature Communications, 10, 1864, (2019).

10.1038/s41467-019-09836-0

181

Fostering sustainable improvements in science education: An analysis through four frames

D. L. Reinholz, C. Ngai, G. Quan, M. E. Pilgrim, J. C. Corbo, N. Finkelstein, Science Education, 103, 1125-1150, (2019).

10.1002/sce.21526

182

Advanced denoising for X-ray ptychography

H. Chang, P. Enfedaque, J. Zhang, J. Reinhardt, B. Enders, Y. Yu, D. Shapiro, C. G. Schroer, T. Zeng, S. Marchesini, Optics Express, 27, 10395, (2019).

10.1364/oe.27.010395

183

Infrared nanospectroscopic imaging in the rotating frame

S. C. Johnson, E. A. Muller, O. Khatib, E. A. Bonnin, A. C. Gagnon, M. B. Raschke, Optica, 6, 424, (2019).

10.1364/optica.6.000424

184

Recent advances in ultrafast X-ray sources

R. Schoenlein, T. Elsaesser, K. Holldack, Z. Huang, H. Kapteyn, M. Murnane, M. Woerner, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 377, 20180384, (2019).

10.1098/rsta.2018.0384

185

pH-dependent gating mechanism of the Helicobacter pylori urea channel revealed by cryo-EM

Y. Cui, K. Zhou, D. Strugatsky, Y. Wen, G. Sachs, Z. Hong Zhou, K. Munson, Science Advances, 5, eaav8423, (2019).

10.1126/sciadv.aav8423

186

Physics-based Learned Design: Optimized Coded-Illumination for Quantitative Phase Imaging

M. R. Kellman, E. Bostan, N. A. Repina, L. Waller, IEEE Transactions on Computational Imaging, 344-353, (2019).

10.1109/tci.2019.2905434

187

Optical phantoms for biomedical polarimetry: a review

J. Chue-Sang, M. Gonzalez, A. Pierre, M. Laughrey, I. Saytashev, T. Novikova, J. C. Ramella-Roman, Journal of Biomedical Optics, 24, 1, (2019).

10.1117/1.jbo.24.3.030901

188

Homochiral and racemic MicroED structures of a peptide repeat from the ice-nucleation protein InaZ

C. Zee, C. Glynn, M. Gallagher-Jones, J. Miao, C. G. Santiago, D. Cascio, T. Gonen, M. R. Sawaya, J. A. Rodriguez, IUCrJ, 6, 197-205, (2019).

10.1107/s2052252518017621

189

Atomic structures and deletion mutant reveal different capsid-binding patterns and functional significance of tegument protein pp150 in murine and human cytomegaloviruses with implications for therapeutic development

W. Liu, X. Dai, J. Jih, K. Chan, P. Trang, X. Yu, R. Balogun, Y. Mei, F. Liu, Z. Hong Zhou, PLOS Pathogens, 15, e1007615, (2019).

10.1371/journal.ppat.1007615

190

Excitation and Emission Transition Dipoles of Type-II Semiconductor Nanorods

S. Ghosh, A. M. Chizhik, G. Yang, N. Karedla, I. Gregor, D. Oron, S. Weiss, J. Enderlein, A. I. Chizhik, Nano Letters, 19, 1695-1700, (2019).

10.1021/acs.nanolett.8b04695

191

Atomic structure of the translation regulatory protein NS1 of bluetongue virus

A. Kerviel, P. Ge, M. Lai, J. Jih, M. Boyce, X. Zhang, Z. Hong Zhou, P. Roy, Nature Microbiology, 4, 837-845, (2019).

10.1038/s41564-019-0369-x

192

Two-photon PSF-engineered image scanning microscopy

O. Tzang, D. Feldkhun, A. Agrawal, A. Jesacher, R. Piestun, Optics Letters, 44, 895, (2019).

10.1364/ol.44.000895

193

Engineering Nanoscale Thermal Transport: Size- and Spacing-Dependent Cooling of Nanostructures

T. D. Frazer, J. L. Knobloch, K. M. Hoogeboom-Pot, D. Nardi, W. Chao, R. W. Falcone, M. M. Murnane, H. C. Kapteyn, J. N. Hernandez-Charpak, Physical Review Applied, 11, 024042, (2019).

10.1103/physrevapplied.11.024042

194

Focusability of laser pulses at petawatt transport intensities in thin-film compression

D. M. Farinella, J. J. Wheeler, A. E. Hussein, J. J. Nees, M. M. Stanfield, N. N. Beier, Y. Y. Ma, G. G. Cojocaru, R. R. Ungureanu, M. M. Pittman, J. J. Demailly, E. E. Baynard, R. R. Fabbri, M. M. Masruri, R. R. Secareanu, A. A. Naziru, R. R. Dabu, A. A. Maksimchuk, K. K. Krushelnick, D. D. Ros, G. G. Mourou, T. T. Tajima, F. F. Dollar, Journal of the Optical Society of America B, 36, A28, (2018).

10.1364/josab.36.000a28

195

Temporal magnification for streaked ultrafast electron diffraction and microscopy

D. D. Cesar, P. P. Musumeci, Ultramicroscopy, 199, 1-6, (2019).

10.1016/j.ultramic.2019.01.003

196

Generalized proximal smoothing (GPS) for phase retrieval

M. Pham, P. Yin, A. Rana, S. Osher, J. Miao, Optics Express, 17, 2792-2808, (2019).

10.1364/oe.27.002792

197

Nanoscale mosaicity revealed in peptide microcrystals by scanning electron nanodiffraction

M. Gallagher-Jones, C. Ophus, K. C. Bustillo, D. R. Boyer, O. Panova, C. Glynn, C. Zee, J. Ciston, K. Mancia, A. M. Minor, J. A. Rodriguez, Communications Biology, 2, 26, (2019).

10.1038/s42003-018-0263-8

198

Focusing and scanning through scattering media in microseconds

D. Feldkhun, O. Tzang, K. H. Wagner, R. Piestun, Optica, 6, 72, (2019).

10.1364/optica.6.000072

199

Blended coarse gradient descent for full quantization of deep neural networks

P. Yin, S. Zhang, J. Lyu, S. Osher, Y. Qi, J. Xin, Research in the Mathematical Sciences, 6, 14, (2019).

10.1007/s40687-018-0177-6

200

Atomic structures of enterovirus D68 in complex with two monoclonal antibodies define distinct mechanisms of viral neutralization

Q. Zheng, R. Zhu, L. Xu, M. He, X. Yan, D. Liu, Z. Yin, Y. Wu, Y. Li, L. Yang, W. Hou, S. Li, Z. Li, Z. Chen, Z. Li, H. Yu, Y. Gu, J. Zhang, T. S. Baker, Z. Hong Zhou, B. S. Graham, T. Cheng, S. Li, N. Xia, Nature Microbiology, 4, 124-133, (2018).

10.1038/s41564-018-0275-7