Publications

201

Commissioning of an X-Band Cavity for Longitudinal Phase Space Linearization at UCLA PEGASUS Laboratory

P. Denham, P. Musumeci, A. Ody, Proceedings of the 13th International Particle Accelerator Conference, Thailand, (2022).

10.18429/JACOW-IPAC2022-THPOST040

202

Electrically controlling and optically observing the membrane potential of supported lipid bilayers

S. Yudovich, A. Marzouqe, J. Kantorovitsch, E. Teblum, T. Chen, J. Enderlein, E. W. Miller, S. Weiss, Biophysical Journal, 121, 2624-2637, (2022).

10.1016/j.bpj.2022.05.037

203

Structure, dynamics and assembly of the ankyrin complex on human red blood cell membrane

X. Xia, S. Liu, Z. ng Zhou, Nature Structural & Molecular Biology, (2022).

10.1038/s41594-022-00779-7

204

Graphics-processing-unit-accelerated Monte Carlo simulation of polarized light in complex three-dimensional media

S. Yan, S. L. Jacques, J. C. Ramella-Roman, Q. Fang, Journal of Biomedical Optics, 27, 083015-1, (2022).

10.1117/1.jbo.27.8.083015

205

Statistical parametrization of cell cytoskeleton reveals lung cancer cytoskeletal phenotype with partial EMT signature

A. Basu, M. K. Paul, M. Alioscha-Perez, A. Grosberg, H. Sahli, S. M. Dubinett, S. Weiss, Communications Biology, 5, 407, (2022).

10.1038/s42003-022-03358-0

206

Structural basis of RNA conformational switching in the transcriptional regulator 7SK RNP

Y. Yang, S. Liu, S. Egloff, C. D. Eichhorn, T. Hadjian, J. Zhen, T. Kiss, Z. ng Zhou, J. Feigon, Molecular Cell, 82, 1724-1736.e7, (2022).

10.1016/j.molcel.2022.03.001

207

Locations and in situ structure of the polymerase complex inside the virion of vesicular stomatitis virus

Z. Si, K. Zhou, J. Tsao, M. Luo, Z. ng Zhou, Proceedings of the National Academy of Sciences, 119, e2111948119, (2022).

10.1073/pnas.2111948119

208

Impacts on student learning, confidence, and affect in a remote, large-enrollment, course-based undergraduate research experience in physics

A. Werth, C. G. West, H. J. Lewandowski, Physical Review Physics Education Research, 18, 010129, (2022).

10.1103/physrevphyseducres.18.010129

209

Structure of active human telomerase with telomere shelterin protein TPP1

B. Liu, Y. He, Y. Wang, H. Song, Z. ng Zhou, J. Feigon, Nature, 604, 578-583, (2022).

10.1038/s41586-022-04582-8

210

Untangling the Mechanisms of Lattice Distortions in Biogenic Crystals across Scales

V. Schoeppler, P. K. Cook, C. Detlefs, R. Demichelis, I. Zlotnikov, Advanced Materials, 34, 2200690, (2022).

10.1002/adma.202200690

211

High-entropy nanoparticles: Synthesis-structure-property relationships and data-driven discovery

Y. Yao, Q. Dong, A. Brozena, J. Luo, J. Miao, M. Chi, C. Wang, I. G. Kevrekidis, Z. Ren, J. Greeley, G. Wang, A. Anapolsky, L. Hu, Science, 376, 6589, (2022).

10.1126/science.abn3103

212

Real-time reconstruction of high energy, ultrafast laser pulses using deep learning

M. Stanfield, J. Ott, C. Gardner, N. F. Beier, D. M. Farinella, C. A. Mancuso, P. Baldi, F. Dollar, Scientific Reports, 12, 5299, (2022).

10.1038/s41598-022-09041-y

213

Self-calibrated 3D differential phase contrast microscopy with optimized illumination

R. Cao, M. Kellman, D. Ren, R. Eckert, L. Waller, Biomedical Optics Express, 13, 1671, (2022).

10.1364/boe.450838

214

Dynamic, Spontaneous Blistering of Substrate-Supported Graphene in Acidic Solutions

Y. Li, B. Wang, W. Li, K. Xu, ACS Nano, (2022).

10.1021/acsnano.1c11616

215

Direct observation of topological magnetic monopoles using soft x-ray vector ptychography at 10 nm resolution

C. Liao, A. Rana, E. Iacocca, J. Zou, M. Pham, X. Lu, E. Subramanian, Y. Lo, S. A. Ryan, C. S. Bevis, R. M. Karl, A. J. Glaid, J. Rable, P. Mahale, J. Hirst, T. Ostler, W. Liu, C. M. O'Leary, Y. Yu, K. Bustillo, H. Ohldag, D. A. Shapiro, S. Yazdi, T. E. Mallouk, S. J. Osher, H. C. Kapteyn, V. H. Crespi, J. V. Badding, Y. Tserkovnyak, J. Miao, M. M. Murnane, Optica High-brightness Sources and Light-driven Interactions Congress 2022, JTh6A.3, (2022).

10.1364/euvxray.2022.jth6a.3

216

Cryogenic 4D-STEM analysis of an amorphous-crystalline polymer blend: Combined nanocrystalline and amorphous phase mapping

J. Donohue, S. E. Zeltmann, K. C. Bustillo, B. Savitzky, M. Jones, G. F. Meyers, C. Ophus, A. M. Minor, iScience, 25, 103882, (2022).

10.1016/j.isci.2022.103882

217

Ultrafast infrared nano-imaging of far-from-equilibrium carrier and vibrational dynamics

J. Nishida, S. C. Johnson, P. S. Chang, D. M. Wharton, S. A. Dönges, O. Khatib, M. B. Raschke, Nature Communications, 13, 1083, (2022).

10.1038/s41467-022-28224-9

218

Membrane potential sensing: Material design and method development for single particle optical electrophysiology

D. Roy, Z. Shapira, S. Weiss, The Journal of Chemical Physics, 156, 084201, (2022).

10.1063/5.0076522

219

Automated Crystal Orientation Mapping in py4DSTEM using Sparse Correlation Matching

C. Ophus, S. E. Zeltmann, A. Bruefach, A. Rakowski, B. H. Savitzky, A. M. Minor, M. C. Scott, Microscopy and Microanalysis, 1-14, (2022).

10.1017/s1431927622000101

220

Hot-Band Absorption Can Mimic Entangled Two-Photon Absorption

A. Mikhaylov, R. N. Wilson, K. M. Parzuchowski, M. D. Mazurek, C. H. Camp, M. J. Stevens, R. Jimenez, The Journal of Physical Chemistry Letters, 13, 1489-1493, (2022).

10.1021/acs.jpclett.1c03751

221

Multiple conformations of trimeric spikes visualized on a non-enveloped virus

Y. Zhang, Y. Cui, J. Sun, Z. ng Zhou, Nature Communications, 13, (2022).

10.1038/s41467-022-28114-0

222

Elucidating the local atomic and electronic structure of amorphous oxidized superconducting niobium films

T. F. Harrelson, E. Sheridan, E. Kennedy, J. Vinson, A. T. N'Diaye, M. P. Altoé, A. Schwartzberg, I. Siddiqi, D. nk Ogletree, M. C. Scott, S. M. Griffin, Applied Physics Letters, 119, 244004, (2021).

10.1063/5.0069549

223

Visualizing the Electron Wind Force in the Elastic Regime

M. Mecklenburg, B. T. Zutter, X. Ling, W. A. Hubbard, B. C. Regan, Nano Letters, 21, 10172-10177, (2021).

10.1021/acs.nanolett.1c02641

224

The epitope arrangement on flavivirus particles contributes to Mab C10’s extraordinary neutralization breadth across Zika and dengue viruses

A. Sharma, X. Zhang, W. Dejnirattisai, X. Dai, D. Gong, W. Wongwiwat, S. Duquerroy, A. Rouvinski, M. Vaney, P. Guardado-Calvo, A. Haouz, P. England, R. Sun, Z. ng Zhou, J. Mongkolsapaya, G. R. Screaton, F. A. Rey, Cell, 184, 6052-6066.e18, (2021).

10.1016/j.cell.2021.11.010

225

Prismatic 2.0-Simulation software for scanning and high resolution transmission electron microscopy (STEM and HRTEM)

L. Rangel DaCosta, H. G. Brown, P. M. Pelz, A. Rakowski, N. Barber, P. O’Donovan, P. McBean, L. Jones, J. Ciston, M. C. Scott, C. Ophus, Micron, 151, 103141, (2021).

10.1016/j.micron.2021.103141

226

Simultaneous Successive Twinning Captured by Atomic Electron Tomography

P. M. Pelz, C. Groschner, A. Bruefach, A. Satariano, C. Ophus, M. C. Scott, ACS Nano, 16, 588-596, (2021).

10.1021/acsnano.1c07772

227

Bluetongue virus capsid protein VP5 perforates membranes at low endosomal pH during viral entry

X. Xia, W. Wu, Y. Cui, P. Roy, Z. ng Zhou, Nature Microbiology, 6, 1424-1432, (2021).

10.1038/s41564-021-00988-8

228

Mapping Charge Recombination and the Effect of Point-Defect Insertion in GaAs Nanowire Heterojunctions

B. T. Zutter, H. Kim, W. A. Hubbard, D. Ren, M. Mecklenburg, D. Huffaker, B. C. Regan, Physical Review Applied, 16, 044030 , (2021).

10.1103/physrevapplied.16.044030

229

Three-dimensional atomic packing in amorphous solids with liquid-like structure

Y. Yuan, D. S. Kim, J. Zhou, D. J. Chang, F. Zhu, Y. Nagaoka, Y. Yang, M. Pham, S. J. Osher, O. Chen, P. Ercius, A. K. Schmid, J. Miao, Nature Materials, 21, 95–102, (2021).

10.1038/s41563-021-01114-z

230

Directional thermal channeling: A phenomenon triggered by tight packing of heat sources

H. Honarvar, J. L. Knobloch, T. D. Frazer, B. Abad, B. McBennett, M. I. Hussein, H. C. Kapteyn, M. M. Murnane, J. N. Hernandez-Charpak, Proceedings of the National Academy of Sciences, 118, e2109056118, (2021).

10.1073/pnas.2109056118

231

Imaging Dielectric Breakdown in Valence Change Memory

W. A. Hubbard, J. J. Lodico, H. Chan, M. Mecklenburg, B. C. Regan, Advanced Functional Materials, 2102313, (2021).

10.1002/adfm.202102313

232

Cryo-EM structure of the sodium-driven chloride/bicarbonate exchanger NDCBE

W. Wang, K. Tsirulnikov, H. Zhekova, G. Kayik, H. Khan, R. Azimov, N. Abuladze, L. Kao, D. Newman, S. Yu Noskov, Z. Hong Zhou, A. Pushkin, I. Kurtz, Nature Communications, 12, (2021).

10.1038/s41467-021-25998-2

233

Structure of human cytomegalovirus virion reveals host tRNA binding to capsid-associated tegument protein pp150

Y. Liu, D. Strugatsky, W. Liu, Z. Hong Zhou, Nature Communication, 12, (2021).

10.1038/s41467-021-25791-1

234

Capturing 3D atomic defects and phonon localization at the 2D heterostructure interface

X. Tian, X. Yan, G. Varnavides, Y. Yuan, D. S. Kim, C. J. Ciccarino, P. Anikeeva, M. Li, L. Li, P. Narang, X. Pan, J. Miao, Science Advances, 7, eabi6699, (2021).

10.1126/sciadv.abi6699

235

4D Beam Tomography at the UCLA Pegasus Laboratory

V. Guo, P. Denham, P. Musumeci, A. Ody, Y. Park, Proceedings of the 10th International Beam Instrumentation Conference, Rep. of Korea, (2021).

10.18429/JACOW-IBIC2021-TUPP15

236

Antibody-Based Inhibition of Pathogenic New World Hemorrhagic Fever Mammarenaviruses by Steric Occlusion of the Human Transferrin Receptor 1 Apical Domain

S. Ferrero, M. D. Flores, C. Short, C. A. Vazquez, L. E. Clark, J. Ziegenbein, S. Zink, D. Fuentes, C. Payes, M. V. Batto, M. Collazo, C. C. García, J. Abraham, S. M. Cordo, J. A. Rodriguez, G. Helguera, Journal of Virology, 95, e01868-20, (2021).

10.1128/jvi.01868-20

237

Soft x-ray linear dichroic ptychography: the study of crystal orientation in biominerals

V. J. Schoeppler, M. A. Marcus, Y. Yu, R. S. Celestre, K. C. Bustillo, R. W. Falcone, D. A. Shapiro, X-Ray Nanoimaging: Instruments and Methods V, Proc. SPIE 11839, 118390D, (2021).

10.1117/12.2594172

238

Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition

C. Ho, J. Jih, M. Lai, X. Li, D. E. Goldberg, J. Beck, Z. Hong Zhou, Proceedings of the National Academy of Sciences, 118, e2100514118, (2021).

10.1073/pnas.2100514118

239

Technique and Computational Improvements in 4D STEM and Cross-Correlation Analysis

T. O'Neill, B. C. Regan, M. Mecklenburg, Microscopy and Microanalysis, 27, 1540-1541, (2021).

10.1017/s1431927621005687

240

Mean Angular Deviation Minimization To Determine Lattice Parameters in Transmission Kikuchi Diffraction

X. Ling, J. Lodico, B. C. Regan, M. Mecklenburg, Microscopy and Microanalysis, 27, 1608-1609, (2021).

10.1017/s1431927621005912

241

In Situ STEM Observations of Elemental Segregation in Phase Change Material GST Under Electrical and Thermal Stress

H. Chan, M. Mecklenburg, W. Hubbard, J. Lodico, B. Zutter, B. C. Regan, Microscopy and Microanalysis, 27, 168-169, (2021).

10.1017/s1431927621001203

242

Imaging Soft and Hard Dielectric Breakdown in Resistive Switching

B. C. Regan, J. Lodico, H. Chan, M. Mecklenburg, W. Hubbard, Microscopy and Microanalysis, 27, 2354-2355, (2021).

10.1017/s1431927621008461

243

Modern STEM EBIC: Emerging Modes and Methods

W. Hubbard, M. Mecklenburg, J. Lodico, B. Zutter, H. Chan, B. C. Regan, Microscopy and Microanalysis, 27, 2350-2352, (2021).

10.1017/s143192762100845x

244

Visualizing the Electron Wind Force in the Elastic Regime

M. Mecklenburg, B. Zutter, W. A. Hubbard, X. Ling, B. C. Regan, Microscopy and Microanalysis, 27, 106-107, (2021).

10.1017/s1431927621001008

245

Identification and architecture of a putative secretion tube across mycobacterial outer envelope

X. Cai, L. Liu, C. Qiu, C. Wen, Y. He, Y. Cui, S. Li, X. Zhang, L. Zhang, C. Tian, L. Bi, Z. Zhou, W. Gong, Science Advances, 7, eabg5656, (2021).

10.1126/sciadv.abg5656

246

Introduction of a 3 × 4 Mueller matrix decomposition method

M. Gonzalez, R. Ossikovski, T. Novikova, J. Ramella-Roman, Journal of Physics D: Applied Physics, 54, 424005, (2021).

10.1088/1361-6463/ac1622

247

Mueller matrix imaging for collagen scoring in mice model of pregnancy

H. Lee, I. Saytashev, V. Du Le, M. Mahendroo, J. Ramella-Roman, T. Novikova, Scientific Reports, 11, 15621, (2021).

10.1038/s41598-021-95020-8

248

Crystallization by Amorphous Particle Attachment: On the Evolution of Texture

V. Schoeppler, D. Stier, R. J. Best, C. Song, J. Turner, B. H. Savitzky, C. Ophus, M. A. Marcus, S. Zhao, K. Bustillo, I. Zlotnikov, Advanced Materials, 2101358, (2021).

10.1002/adma.202101358

249

A General and Predictive Understanding of Thermal Transport from 1D- and 2D-Confined Nanostructures: Theory and Experiment

A. Beardo, J. L. Knobloch, L. Sendra, J. Bafaluy, T. D. Frazer, W. Chao, J. N. Hernandez-Charpak, H. C. Kapteyn, B. Abad, M. M. Murnane, F. er Alvarez, J. Camacho, ACS Nano, 15, 13019-13030, (2021).

10.1021/acsnano.1c01946

250

Scattering Matrix Determination in Crystalline Materials from 4D Scanning Transmission Electron Microscopy at a Single Defocus Value

S. D. Findlay, H. G. Brown, P. M. Pelz, C. Ophus, J. Ciston, L. J. Allen, Microscopy and Microanalysis, 27, 744-757, (2021).

10.1017/s1431927621000490

STROBE Publications

2022

Commissioning of an X-Band Cavity for Longitudinal Phase Space Linearization at UCLA PEGASUS Laboratory

Electrically controlling and optically observing the membrane potential of supported lipid bilayers

Structure, dynamics and assembly of the ankyrin complex on human red blood cell membrane

Graphics-processing-unit-accelerated Monte Carlo simulation of polarized light in complex three-dimensional media

Statistical parametrization of cell cytoskeleton reveals lung cancer cytoskeletal phenotype with partial EMT signature

Structural basis of RNA conformational switching in the transcriptional regulator 7SK RNP

Locations and in situ structure of the polymerase complex inside the virion of vesicular stomatitis virus

Impacts on student learning, confidence, and affect in a remote, large-enrollment, course-based undergraduate research experience in physics

Structure of active human telomerase with telomere shelterin protein TPP1

Untangling the Mechanisms of Lattice Distortions in Biogenic Crystals across Scales

High-entropy nanoparticles: Synthesis-structure-property relationships and data-driven discovery

Real-time reconstruction of high energy, ultrafast laser pulses using deep learning

Self-calibrated 3D differential phase contrast microscopy with optimized illumination

Dynamic, Spontaneous Blistering of Substrate-Supported Graphene in Acidic Solutions

Direct observation of topological magnetic monopoles using soft x-ray vector ptychography at 10 nm resolution

Cryogenic 4D-STEM analysis of an amorphous-crystalline polymer blend: Combined nanocrystalline and amorphous phase mapping

Ultrafast infrared nano-imaging of far-from-equilibrium carrier and vibrational dynamics

Membrane potential sensing: Material design and method development for single particle optical electrophysiology

Automated Crystal Orientation Mapping in py4DSTEM using Sparse Correlation Matching

Hot-Band Absorption Can Mimic Entangled Two-Photon Absorption

Multiple conformations of trimeric spikes visualized on a non-enveloped virus

2021

Elucidating the local atomic and electronic structure of amorphous oxidized superconducting niobium films

Visualizing the Electron Wind Force in the Elastic Regime

The epitope arrangement on flavivirus particles contributes to Mab C10’s extraordinary neutralization breadth across Zika and dengue viruses

Prismatic 2.0-Simulation software for scanning and high resolution transmission electron microscopy (STEM and HRTEM)

Simultaneous Successive Twinning Captured by Atomic Electron Tomography

Bluetongue virus capsid protein VP5 perforates membranes at low endosomal pH during viral entry

Mapping Charge Recombination and the Effect of Point-Defect Insertion in GaAs Nanowire Heterojunctions

Three-dimensional atomic packing in amorphous solids with liquid-like structure

Directional thermal channeling: A phenomenon triggered by tight packing of heat sources

Imaging Dielectric Breakdown in Valence Change Memory

Cryo-EM structure of the sodium-driven chloride/bicarbonate exchanger NDCBE

Structure of human cytomegalovirus virion reveals host tRNA binding to capsid-associated tegument protein pp150

Capturing 3D atomic defects and phonon localization at the 2D heterostructure interface

4D Beam Tomography at the UCLA Pegasus Laboratory

Antibody-Based Inhibition of Pathogenic New World Hemorrhagic Fever Mammarenaviruses by Steric Occlusion of the Human Transferrin Receptor 1 Apical Domain

Soft x-ray linear dichroic ptychography: the study of crystal orientation in biominerals

Native structure of the RhopH complex, a key determinant of malaria parasite nutrient acquisition

Technique and Computational Improvements in 4D STEM and Cross-Correlation Analysis

Mean Angular Deviation Minimization To Determine Lattice Parameters in Transmission Kikuchi Diffraction

In Situ STEM Observations of Elemental Segregation in Phase Change Material GST Under Electrical and Thermal Stress

Imaging Soft and Hard Dielectric Breakdown in Resistive Switching

Modern STEM EBIC: Emerging Modes and Methods

Visualizing the Electron Wind Force in the Elastic Regime

Identification and architecture of a putative secretion tube across mycobacterial outer envelope

Introduction of a 3 × 4 Mueller matrix decomposition method

Mueller matrix imaging for collagen scoring in mice model of pregnancy

Crystallization by Amorphous Particle Attachment: On the Evolution of Texture

A General and Predictive Understanding of Thermal Transport from 1D- and 2D-Confined Nanostructures: Theory and Experiment

Scattering Matrix Determination in Crystalline Materials from 4D Scanning Transmission Electron Microscopy at a Single Defocus Value