Publications

251

Mueller matrix imaging for collagen scoring in mice model of pregnancy

H. Lee, I. Saytashev, V. Du Le, M. Mahendroo, J. Ramella-Roman, T. Novikova, Scientific Reports, 11, 15621, (2021).

252

Crystallization by Amorphous Particle Attachment: On the Evolution of Texture

V. Schoeppler, D. Stier, R. J. Best, C. Song, J. Turner, B. H. Savitzky, C. Ophus, M. A. Marcus, S. Zhao, K. Bustillo, I. Zlotnikov, Advanced Materials, 2101358, (2021).

10.1002/adma.202101358

253

A General and Predictive Understanding of Thermal Transport from 1D- and 2D-Confined Nanostructures: Theory and Experiment

A. Beardo, J. L. Knobloch, L. Sendra, J. Bafaluy, T. D. Frazer, W. Chao, J. N. Hernandez-Charpak, H. C. Kapteyn, B. Abad, M. M. Murnane, F. er Alvarez, J. Camacho, ACS Nano, 15, 13019-13030, (2021).

10.1021/acsnano.1c01946

254

Scattering Matrix Determination in Crystalline Materials from 4D Scanning Transmission Electron Microscopy at a Single Defocus Value

S. D. Findlay, H. G. Brown, P. M. Pelz, C. Ophus, J. Ciston, L. J. Allen, Microscopy and Microanalysis, 27, 744-757, (2021).

10.1017/s1431927621000490

255

Multidimensional Nano-Imaging of Structure, Coupling, and Disorder in Molecular Materials

S. A. Dönges, R. Peyton Cline, S. E. Zeltmann, J. Nishida, B. Metzger, A. M. Minor, J. Eaves, M. B. Raschke, Nano Letters, 21, 6463-6470, (2021).

10.1021/acs.nanolett.1c01369

256

Maximizing the Field of View in Blind Ptychography

N. W. Jenkins, M. Tanksalvala, Y. Esashi, Z. Zhang, C. S. Bevis, M. N. Jacobs, P. Johnsen, C. Liao, M. Gerrity, H. C. Kapteyn, M. M. Murnane, OSA Imaging and Applied Optics Congress 2021 (3D, COSI, DH, ISA, pcAOP), paper CW6B.1, (2021).

10.1364/cosi.2021.cw6b.1

257

Stratified Diffractive Optical Elements for Azimuthal Multiplexing

H. Wang, R. Piestun, OSA Imaging and Applied Optics Congress 2021 (3D, COSI, DH, ISA, pcAOP), (2021).

10.1364/dh.2021.dth7c.6

258

Structure of the trypanosome paraflagellar rod and insights into non-planar motility of eukaryotic cells

J. Zhang, H. Wang, S. Imhof, X. Zhou, S. Liao, I. Atanasov, W. Hui, K. Hill, Z. Hong Zhou, Cell Discovery, 7, (2021).

10.1038/s41421-021-00281-2

259

Asymmetric reconstruction of mammalian reovirus reveals interactions among RNA, transcriptional factor mu 2 and capsid proteins

M. Pan, A. L. Alvarez-Cabrera, J. S. Kang, L. Wang, C. Fan, Z. Hong Zhou, Nature Communications, 12, 4176, (2021).

10.1038/s41467-021-24455-4

260

A Fast Algorithm for Scanning Transmission Electron Microscopy Imaging and 4D-STEM Diffraction Simulations

P. M. Pelz, A. Rakowski, L. Rangel DaCosta, B. H. Savitzky, M. C. Scott, C. Ophus, Microscopy and Microanalysis, 27, 835-848, (2021).

10.1017/s1431927621012083

261

Ultrafast optical melting of trimer superstructure in layered 1T′-TaTe2

K. M. Siddiqui, D. B. Durham, F. Cropp, C. Ophus, S. Rajpurohit, Y. Zhu, J. D. Carlström, C. Stavrakas, Z. Mao, A. Raja, P. Musumeci, L. Z. Tan, A. M. Minor, D. Filippetto, R. A. Kaindl, Communications Physics, 4, (2021).

10.1038/s42005-021-00650-z

262

2D Vibrational Exciton Nanoimaging of Domain Formation in Self-Assembled Monolayers

T. P. Gray, J. Nishida, S. C. Johnson, M. B. Raschke, Nano Letters, 21, 5754-5759, (2021).

10.1021/acs.nanolett.1c01515

263

Untrained networks for compressive lensless photography

K. Monakhova, V. Tran, G. Kuo, L. Waller, Optics Express, 29, 20913-20929, (2021).

10.1364/oe.424075

264

Persistent and partially mobile oxygen vacancies in Li-rich layered oxides

P. M. Csernica, S. S. Kalirai, W. E. Gent, K. Lim, Y. Yu, Y. Liu, S. Ahn, E. Kaeli, X. Xu, K. H. Stone, A. F. Marshall, R. Sinclair, D. A. Shapiro, M. F. Toney, W. C. Chueh, Nature Energy, (2021).

10.1038/s41560-021-00832-7

265

Phase-contrast imaging of multiply-scattering extended objects at atomic resolution by reconstruction of the scattering matrix

P. M. Pelz, H. G. Brown, S. Stonemeyer, S. D. Findlay, A. Zettl, P. Ercius, Y. Zhang, J. Ciston, M. C. Scott, C. Ophus, Physical Review Research, 3, 023159, (2021).

10.1103/physrevresearch.3.023159

266

Pushing Spatial Resolution Limits in Single-shot Time-resolved Transmission Electron Microscopy at the UCLA Pegasus Laboratory

P. Denham, P. Musumeci, Proceedings of the 12th International Particle Accelerator Conference, Brazil, (2021).

10.18429/JACOW-IPAC2021-TUPAB417

267

Applying a mathematical sense-making framework to student work and its potential for curriculum design

J. D. Gifford, N. D. Finkelstein, Physical Review Physics Education Research, 17, 010138 , (2021).

10.1103/physrevphyseducres.17.010138

268

py4DSTEM: A Software Package for Four-Dimensional Scanning Transmission Electron Microscopy Data Analysis

B. H. Savitzky, S. E. Zeltmann, L. A. Hughes, H. G. Brown, S. Zhao, P. M. Pelz, T. C. Pekin, E. S. Barnard, J. Donohue, L. Rangel DaCosta, E. Kennedy, Y. Xie, M. T. Janish, M. M. Schneider, P. Herring, C. Gopal, A. Anapolsky, R. Dhall, K. C. Bustillo, P. Ercius, M. C. Scott, J. Ciston, A. M. Minor, C. Ophus, Microscopy and Microanalysis, 27, 712-743, (2021).

10.1017/s1431927621000477

269

Influence of surface and interface roughness on X-ray and extreme ultraviolet reflectance: A comparative numerical study

Y. Esashi, M. Tanksalvala, Z. Zhang, N. W. Jenkins, H. C. Kapteyn, M. M. Murnane, OSA Continuum, 4, 1497-1518, (2021).

10.1364/osac.422924

270

Multiview Virtual Confocal Microscopy Through A Multimode Fiber

S. Singh, S. Labouesse, R. Piestun, 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), (2021).

10.1109/isbi48211.2021.9433950

271

Correlative nano-spectroscopic imaging of heterogeneity in migrated petroleum in unconventional reservoir pores

R. E. Simon, S. C. Johnson, O. Khatib, M. B. Raschke, D. A. Budd, Fuel, 100, 120836, (2021).

10.1016/j.fuel.2021.120836

272

4D-STEM of Beam-Sensitive Materials

K. C. Bustillo, S. E. Zeltmann, M. Chen, J. Donohue, J. Ciston, C. Ophus, A. M. Minor, Accounts of Chemical Research, (2021).

10.1021/acs.accounts.1c00073

273

Structures of telomerase at several steps of telomere repeat synthesis

Y. He, Y. Wang, B. Liu, C. Helmling, L. Sušac, R. Cheng, Z. Hong Zhou, J. Feigon, Nature, 593, 454-459, (2021).

10.1038/s41586-021-03529-9

274

Extreme mixing in nanoscale transition metal alloys

Y. Yao, Z. Huang, L. A. Hughes, J. Gao, T. Li, D. Morris, S. Zeltmann, B. H. Savitzky, C. Ophus, Y. Zou Finfrock, Q. Dong, M. Jiao, Y. Mao, M. Chi, P. Zhang, J. Li, A. Minor, R. Shahbazian-Yassar, L. Hu, Matter, 4, 2340-2353, (2021).

10.1016/j.matt.2021.04.014

275

Tunable mode control through myriad-mode fibers

S. Singh, S. Labouesse, R. Piestun, Journal of Lightwave Technology, 39, 2961-2970, (2021).

10.1109/jlt.2021.3057615

276

Setting Bounds on Entangled Two-Photon Absorption Cross Sections in Common Fluorophores

K. M. Parzuchowski, A. Mikhaylov, M. D. Mazurek, R. N. Wilson, D. J. Lum, T. Gerrits, C. H. Camp, M. J. Stevens, R. Jimenez, Physical Review Applied, 15, 044012 , (2021).

10.1103/physrevapplied.15.044012

277

Auto-detection of cervical collagen and elastin in Mueller matrix polarimetry microscopic images using K-NN and semantic segmentation classification

C. Roa, V. N. Du Le, M. Mahendroo, I. Saytashev, J. C. Ramella-Roman, Biomedical Optics Express, 12, 2236, (2021).

10.1364/boe.420079

278

Atomic Structure of the Trichomonas vaginalis Double-Stranded RNA Virus 2

A. Stevens, K. Muratore, Y. Cui, P. Johnson, Z. Hong Zhou, mBio, 12, (2021).

10.1128/mbio.02924-20

279

Differential electron yield imaging with STXM

W. A. Hubbard, J. J. Lodico, X. Ling, B. T. Zutter, Y. Yu, D. A. Shapiro, B. C. Regan, Ultramicroscopy, 222, 113198, (2021).

10.1016/j.ultramic.2020.113198

280

Millijoule few-cycle pulses from staged compression for strong and high field science

M. Stanfield, N. F. Beier, S. Hakimi, H. Allison, D. Farinella, A. E. Hussein, T. Tajima, F. Dollar, Optics Express, 29, 9123, (2021).

10.1364/oe.417404

281

Visualizing the melting of periodic lattice distortions in a complex 2D charge density wave material via MeV-scale ultrafast electron diffraction

K. M. Siddiqui, D. B. Durham, F. Cropp, S. Rajpurohit, C. Ophus, Y. Zhu, J. Carlstroem, C. Stavrakas, Z. Q. Mao, A. Raja, P. Musumeci, L. Z. Tan, A. M. Minor, R. A. Kaindl, D. Filippetto, Ultrafast Phenomena and Nanophotonics XXV, (2021).

10.1117/12.2577621

282

Pycro-Manager: open-source software for customized and reproducible microscope control

H. Pinkard, N. Stuurman, I. E. Ivanov, N. M. Anthony, W. Ouyang, B. Li, B. Yang, M. A. Tsuchida, B. Chhun, G. Zhang, R. Mei, M. Anderson, D. P. Shepherd, I. Hunt-Isaak, R. L. Dunn, W. Jahr, S. Kato, L. A. Royer, J. R. Thiagarajah, K. W. Eliceiri, E. Lundberg, S. B. Mehta, L. Waller, Nature Methods, 18, 226-228, (2021).

10.1038/s41592-021-01087-6

283

Determining the three-dimensional atomic structure of an amorphous solid

Y. Yang, J. Zhou, F. Zhu, Y. Yuan, . J. Chang, D. S. Kim, M. Pham, A. Rana, X. Tian, Y. Yao, S. J. Osher, A. K. Schmid, L. Hu, P. Ercius, J. Miao, Nature, 592, 60-64, (2021).

10.1038/s41586-021-03354-0

284

A new metrology technique for defect inspection via coherent Fourier scatterometry using orbital angular momentum beams

B. Wang, M. Tanksalvala, Z. Zhang, Y. Esashi, N. Jenkins, M. Murnane, H. Kapteyn, C. Liao, Metrology, Inspection, and Process Control for Semiconductor Manufacturing XXXV, (2021).

10.1117/12.2584728

285

Space-Charge Aberrations in Single-Shot Time-Resolved Transmission Electron Microscopy

P. P. Denham, P. P. Musumeci, Physical Review Applied, 15, 024050 , (2021).

10.1103/physrevapplied.15.024050

286

Probing electronic structure in berkelium and californium via an electron microscopy nanosampling approach

A. Müller, G. P. Deblonde, P. Ercius, S. E. Zeltmann, R. J. Abergel, A. M. Minor, Nature Communications, 12, 948, (2021).

10.1038/s41467-021-21189-1

287

Coherent Fourier scatterometry using orbital angular momentum beams for defect detection

B. Wang, M. Tanksalvala, Z. Zhang, Y. Esashi, N. W. Jenkins, M. M. Murnane, H. C. Kapteyn, C. Liao, Optics Express, 29, 3342-3358, (2021).

10.1364/oe.414584

288

Multibeam Electron Diffraction

X. Hong, S. E. Zeltmann, B. H. Savitzky, L. Rangel DaCosta, A. Müller, A. M. Minor, K. C. Bustillo, C. Ophus, Microscopy and Microanalysis, 27, 129-139, (2021).

10.1017/s1431927620024770

289

Rapid Detection of Bacteria Using Raman Spectroscopy and Deep Learning

K. Kukula, D. Farmer, J. Duran, N. Majid, C. Chatterley, J. Jessing, Y. Li, 2021 IEEE 11th Annual Computing and Communication Workshop and Conference (CCWC), (2021).

10.1109/ccwc51732.2021.9375955

290

Nondestructive, high-resolution, chemically specific 3D nanostructure characterization using phase-sensitive EUV imaging reflectometry

M. Tanksalvala, C. L. Porter, Y. Esashi, B. Wang, N. W. Jenkins, Z. Zhang, G. P. Miley, J. L. Knobloch, B. McBennett, N. Horiguchi, S. Yazdi, J. Zhou, M. N. Jacobs, C. S. Bevis, R. M. Karl, P. Johnsen, D. Ren, L. Waller, D. E. Adams, S. L. Cousin, C. Liao, J. Miao, M. Gerrity, H. C. Kapteyn, M. M. Murnane, Science Advances, 7, eabd9667, (2021).

10.1126/sciadv.abd9667

291

X-ray linear dichroic ptychography

Y. Lo, J. Zhou, A. Rana, D. Morrill, C. Gentry, B. Enders, Y. Yu, C. Sun, D. A. Shapiro, R. W. Falcone, H. C. Kapteyn, M. M. Murnane, P. A. Gilbert, J. Miao, Proceedings of the National Academy of Sciences, e2019068118, (2021).

10.1073/pnas.2019068118

292

Facile, Electrochemical Chlorination of Graphene from an Aqueous NaCl Solution

W. Li, Y. Li, K. Xu, Nano Letters, 21, 1150-1155, (2021).

10.1021/acs.nanolett.0c04641

293

4D Imaging of ZnO-Coated Nanoporous Al2O3 Aerogels by Chemically Sensitive Ptychographic Tomography: Implications for Designer Catalysts

H. Yuan, H. Yuan, T. Casagrande, D. Shapiro, Y. Yu, B. Enders, J. I. Lee, A. van Buuren, M. M. Biener, S. A. Gammon, T. F. Baumann, A. P. Hitchcock, ACS Applied Nano Materials, 4, 621-632, (2021).

10.1021/acsanm.0c02924

294

Laplacian smoothing stochastic gradient markov chain monte carlo

B. Wang, D. Zou, Q. Gu, S. J. Osher, SIAM Journal on Scientific Computing, 43, A26-A53, (2021).

10.1137/19m1294356

295

Ab Initio Determination of Peptide Structures by MicroED

C. Zee, A. Saha, M. R. Sawaya, J. A. Rodriguez, cryoEM, 2215, 329-348, (2020).

10.1007/978-1-0716-0966-8_17

296

An ultrahigh-resolution soft x-ray microscope for quantitative analysis of chemically heterogeneous nanomaterials

D. A. Shapiro, S. Babin, R. S. Celestre, W. Chao, R. P. Conley, P. Denes, B. Enders, P. Enfedaque, S. James, J. M. Joseph, H. Krishnan, S. Marchesini, K. Muriki, K. Nowrouzi, S. R. Oh, H. Padmore, T. Warwick, L. Yang, V. V. Yashchuk, Y. Yu, J. Zhao, Science Advances, 6, eabc4904, (2020).

10.1126/sciadv.abc4904

297

Impact of a course transformation on students’ reasoning about measurement uncertainty

B. Pollard, A. Werth, R. Hobbs, H. J. Lewandowski, Physical Review Physics Education Research, 16, 020160, (2020).

10.1103/physrevphyseducres.16.020160

298

Refining a model for understanding and characterizing instructor pedagogy in informal physics learning environments

M. B. Bennett, B. Fiedler, N. D. Finkelstein, Physical Review Physics Education Research, 16, 020137, (2020).

10.1103/physrevphyseducres.16.020137

299

Ptychographic Phase-Sensitive Imaging Reflectometry for Depth-Resolved Nanostructure Characterization using Tabletop EUV Light

N. W. Jenkins, M. Tanksalvala, Y. Esashi, C. L. Porter, B. Wang, N. Horiguchi, M. N. Jacobs, M. Gerrity, H. C. Kapteyn, M. M. Murnane, OSA High-brightness Sources and Light-driven Interactions Congress 2020 (EUVXRAY, HILAS, MICS), (2020).

10.1364/euvxray.2020.ew3a.4

300

Smart Scattering Scanning Near-Field Optical Microscopy

S. Labouesse, S. C. Johnson, H. A. Bechtel, M. B. Raschke, R. Piestun, ACS Photonics, 7, 3346-3352, (2020).

10.1021/acsphotonics.0c00553

STROBE Publications

2021