Publications

251

Setting Bounds on Entangled Two-Photon Absorption Cross Sections in Common Fluorophores

K. M. Parzuchowski, A. Mikhaylov, M. D. Mazurek, R. N. Wilson, D. J. Lum, T. Gerrits, C. H. Camp, M. J. Stevens, R. Jimenez, Physical Review Applied, 15, 044012 , (2021).

10.1103/physrevapplied.15.044012

252

Auto-detection of cervical collagen and elastin in Mueller matrix polarimetry microscopic images using K-NN and semantic segmentation classification

C. Roa, V. N. Du Le, M. Mahendroo, I. Saytashev, J. C. Ramella-Roman, Biomedical Optics Express, 12, 2236, (2021).

10.1364/boe.420079

253

Differential electron yield imaging with STXM

W. A. Hubbard, J. J. Lodico, X. Ling, B. T. Zutter, Y. Yu, D. A. Shapiro, B. C. Regan, Ultramicroscopy, 222, 113198, (2021).

10.1016/j.ultramic.2020.113198

254

Atomic Structure of the Trichomonas vaginalis Double-Stranded RNA Virus 2

A. Stevens, K. Muratore, Y. Cui, P. Johnson, Z. Hong Zhou, mBio, 12, (2021).

10.1128/mbio.02924-20

255

Millijoule few-cycle pulses from staged compression for strong and high field science

M. Stanfield, N. F. Beier, S. Hakimi, H. Allison, D. Farinella, A. E. Hussein, T. Tajima, F. Dollar, Optics Express, 29, 9123, (2021).

10.1364/oe.417404

256

Visualizing the melting of periodic lattice distortions in a complex 2D charge density wave material via MeV-scale ultrafast electron diffraction

K. M. Siddiqui, D. B. Durham, F. Cropp, S. Rajpurohit, C. Ophus, Y. Zhu, J. Carlstroem, C. Stavrakas, Z. Q. Mao, A. Raja, P. Musumeci, L. Z. Tan, A. M. Minor, R. A. Kaindl, D. Filippetto, Ultrafast Phenomena and Nanophotonics XXV, (2021).

10.1117/12.2577621

257

Pycro-Manager: open-source software for customized and reproducible microscope control

H. Pinkard, N. Stuurman, I. E. Ivanov, N. M. Anthony, W. Ouyang, B. Li, B. Yang, M. A. Tsuchida, B. Chhun, G. Zhang, R. Mei, M. Anderson, D. P. Shepherd, I. Hunt-Isaak, R. L. Dunn, W. Jahr, S. Kato, L. A. Royer, J. R. Thiagarajah, K. W. Eliceiri, E. Lundberg, S. B. Mehta, L. Waller, Nature Methods, 18, 226-228, (2021).

10.1038/s41592-021-01087-6

258

Determining the three-dimensional atomic structure of an amorphous solid

Y. Yang, J. Zhou, F. Zhu, Y. Yuan, . J. Chang, D. S. Kim, M. Pham, A. Rana, X. Tian, Y. Yao, S. J. Osher, A. K. Schmid, L. Hu, P. Ercius, J. Miao, Nature, 592, 60-64, (2021).

10.1038/s41586-021-03354-0

259

Space-Charge Aberrations in Single-Shot Time-Resolved Transmission Electron Microscopy

P. P. Denham, P. P. Musumeci, Physical Review Applied, 15, 024050 , (2021).

10.1103/physrevapplied.15.024050

260

A new metrology technique for defect inspection via coherent Fourier scatterometry using orbital angular momentum beams

B. Wang, M. Tanksalvala, Z. Zhang, Y. Esashi, N. Jenkins, M. Murnane, H. Kapteyn, C. Liao, Metrology, Inspection, and Process Control for Semiconductor Manufacturing XXXV, (2021).

10.1117/12.2584728

261

Probing electronic structure in berkelium and californium via an electron microscopy nanosampling approach

A. Müller, G. P. Deblonde, P. Ercius, S. E. Zeltmann, R. J. Abergel, A. M. Minor, Nature Communications, 12, 948, (2021).

10.1038/s41467-021-21189-1

262

Multibeam Electron Diffraction

X. Hong, S. E. Zeltmann, B. H. Savitzky, L. Rangel DaCosta, A. Müller, A. M. Minor, K. C. Bustillo, C. Ophus, Microscopy and Microanalysis, 27, 129-139, (2021).

10.1017/s1431927620024770

263

Coherent Fourier scatterometry using orbital angular momentum beams for defect detection

B. Wang, M. Tanksalvala, Z. Zhang, Y. Esashi, N. W. Jenkins, M. M. Murnane, H. C. Kapteyn, C. Liao, Optics Express, 29, 3342-3358, (2021).

10.1364/oe.414584

264

Rapid Detection of Bacteria Using Raman Spectroscopy and Deep Learning

K. Kukula, D. Farmer, J. Duran, N. Majid, C. Chatterley, J. Jessing, Y. Li, 2021 IEEE 11th Annual Computing and Communication Workshop and Conference (CCWC), (2021).

10.1109/ccwc51732.2021.9375955

265

Nondestructive, high-resolution, chemically specific 3D nanostructure characterization using phase-sensitive EUV imaging reflectometry

M. Tanksalvala, C. L. Porter, Y. Esashi, B. Wang, N. W. Jenkins, Z. Zhang, G. P. Miley, J. L. Knobloch, B. McBennett, N. Horiguchi, S. Yazdi, J. Zhou, M. N. Jacobs, C. S. Bevis, R. M. Karl, P. Johnsen, D. Ren, L. Waller, D. E. Adams, S. L. Cousin, C. Liao, J. Miao, M. Gerrity, H. C. Kapteyn, M. M. Murnane, Science Advances, 7, eabd9667, (2021).

10.1126/sciadv.abd9667

266

X-ray linear dichroic ptychography

Y. Lo, J. Zhou, A. Rana, D. Morrill, C. Gentry, B. Enders, Y. Yu, C. Sun, D. A. Shapiro, R. W. Falcone, H. C. Kapteyn, M. M. Murnane, P. A. Gilbert, J. Miao, Proceedings of the National Academy of Sciences, e2019068118, (2021).

10.1073/pnas.2019068118

267

Facile, Electrochemical Chlorination of Graphene from an Aqueous NaCl Solution

W. Li, Y. Li, K. Xu, Nano Letters, 21, 1150-1155, (2021).

10.1021/acs.nanolett.0c04641

268

4D Imaging of ZnO-Coated Nanoporous Al2O3 Aerogels by Chemically Sensitive Ptychographic Tomography: Implications for Designer Catalysts

H. Yuan, H. Yuan, T. Casagrande, D. Shapiro, Y. Yu, B. Enders, J. I. Lee, A. van Buuren, M. M. Biener, S. A. Gammon, T. F. Baumann, A. P. Hitchcock, ACS Applied Nano Materials, 4, 621-632, (2021).

10.1021/acsanm.0c02924

269

Laplacian smoothing stochastic gradient markov chain monte carlo

B. Wang, D. Zou, Q. Gu, S. J. Osher, SIAM Journal on Scientific Computing, 43, A26-A53, (2021).

10.1137/19m1294356

270

Ab Initio Determination of Peptide Structures by MicroED

C. Zee, A. Saha, M. R. Sawaya, J. A. Rodriguez, cryoEM, 2215, 329-348, (2020).

10.1007/978-1-0716-0966-8_17

271

An ultrahigh-resolution soft x-ray microscope for quantitative analysis of chemically heterogeneous nanomaterials

D. A. Shapiro, S. Babin, R. S. Celestre, W. Chao, R. P. Conley, P. Denes, B. Enders, P. Enfedaque, S. James, J. M. Joseph, H. Krishnan, S. Marchesini, K. Muriki, K. Nowrouzi, S. R. Oh, H. Padmore, T. Warwick, L. Yang, V. V. Yashchuk, Y. Yu, J. Zhao, Science Advances, 6, eabc4904, (2020).

10.1126/sciadv.abc4904

272

Impact of a course transformation on students’ reasoning about measurement uncertainty

B. Pollard, A. Werth, R. Hobbs, H. J. Lewandowski, Physical Review Physics Education Research, 16, 020160, (2020).

10.1103/physrevphyseducres.16.020160

273

Refining a model for understanding and characterizing instructor pedagogy in informal physics learning environments

M. B. Bennett, B. Fiedler, N. D. Finkelstein, Physical Review Physics Education Research, 16, 020137, (2020).

10.1103/physrevphyseducres.16.020137

274

Ptychographic Phase-Sensitive Imaging Reflectometry for Depth-Resolved Nanostructure Characterization using Tabletop EUV Light

N. W. Jenkins, M. Tanksalvala, Y. Esashi, C. L. Porter, B. Wang, N. Horiguchi, M. N. Jacobs, M. Gerrity, H. C. Kapteyn, M. M. Murnane, OSA High-brightness Sources and Light-driven Interactions Congress 2020 (EUVXRAY, HILAS, MICS), (2020).

10.1364/euvxray.2020.ew3a.4

275

Smart Scattering Scanning Near-Field Optical Microscopy

S. Labouesse, S. C. Johnson, H. A. Bechtel, M. B. Raschke, R. Piestun, ACS Photonics, 7, 3346-3352, (2020).

10.1021/acsphotonics.0c00553

276

A review of polarization-based imaging technologies for clinical and preclinical applications

J. Ramella-Roman, I. Saytashev, M. Piccini, Journal of Optics, 22, 123001, (2020).

10.1088/2040-8986/abbf8a

277

Mesophasic organization of GABAA receptors in hippocampal inhibitory synapses

Y. Liu, C. Tao, X. Zhang, W. Xia, D. Shi, L. Qi, C. Xu, R. Sun, X. Li, P. Lau, Z. Hong Zhou, G. Bi, Nature Neuroscience, 1589-1596, (2020).

10.1038/s41593-020-00729-w

278

Generating Relativistic Intensities via Staged Pulse Compression in Dielectric Media

M. M. Stanfield, H. H. Allison, N. F. Beier, S. S. Hakimi, A. E. Hussein, F. F. Dollar, OSA High-brightness Sources and Light-driven Interactions Congress 2020 (EUVXRAY, HILAS, MICS), (2020).

10.1364/euvxray.2020.jm3a.22

279

Ptychographic atomic electron tomography: Towards three-dimensional imaging of individual light atoms in materials

D. J. Chang, D. S. Kim, A. Rana, X. Tian, J. Zhou, P. Ercius, J. Miao, Physical Review B, 102, 174101, (2020).

10.1103/physrevb.102.174101

280

Depth-resolved Mueller matrix polarimetry microscopy of the rat cornea

V. N. Du Le, I. Saytashev, S. Saha, P. F. Lopez, M. Laughrey, J. C. Ramella-Roman, Biomedical Optics Express, 5982, (2020).

10.1364/boe.402201

281

Structures from the Mesophase: MicroED Targets Crystals Extracted from LCP

M. Gallagher-Jones, J. A. Rodriguez, Structure, 28, 1084-1086, (2020).

10.1016/j.str.2020.09.005

282

Spectral DiffuserCam: lensless snapshot hyperspectral imaging with a spectral filter array

K. Monakhova, K. Yanny, N. Aggarwal, L. Waller, Optica, 7, 1298-1307, (2020).

10.1364/optica.397214

283

A Calcium Sensor Discovered in Bluetongue Virus Nonstructural Protein 2 Is Critical for Virus Replication

S. Rahman, A. Kerviel, B. Mohl, Y. He, Z. Hong Zhou, P. Roy, Journal of Virology, (2020).

10.1128/jvi.01099-20

284

Memory-Efficient Learning for Large-Scale Computational Imaging

M. Kellman, K. Zhang, E. Markley, J. Tamir, E. Bostan, M. Lustig, L. Waller, IEEE Transactions on Computational Imaging, 6, 1403-1414, (2020).

10.1109/tci.2020.3025735

285

Categorical framework for mathematical sense making in physics

J. D. Gifford, N. D. Finkelstein, Physical Review Physics Education Research, 16, 020121, (2020).

10.1103/physrevphyseducres.16.020121

286

An ultra-compact x-ray free-electron laser

J. Rosenzweig, N. Majernik, R. Robles, G. Andonian, O. Camacho, A. Fukasawa, A. Kogar, G. Lawler, J. Miao, P. Musumeci, B. Naranjo, Y. Sakai, R. Candler, B. Pound, C. Pellegrini, C. Emma, A. Halavanau, J. Hastings, Z. Li, M. Nasr, S. Tantawi, P. P. Anisimov, B. Carlsten, F. Krawczyk, E. Simakov, L. Faillace, M. Ferrario, B. Spataro, S. Karkare, J. Maxson, Y. Ma, J. Wurtele, A. Murokh, A. Zholents, A. Cianchi, D. Cocco, S. van der Geer, New Journal of Physics, 093067, (2020).

10.1088/1367-2630/abb16c

287

Tilted fluctuation electron microscopy

E. Kennedy, N. Reynolds, L. Rangel DaCosta, F. Hellman, C. Ophus, M. C. Scott, Applied Physics Letters, 117, 091903, (2020).

10.1063/5.0015532

288

Process of transforming of an introductory mechanics lab course at Fort Lewis College

A. Werth, H. J. Lewandowski, 2020 Physics Education Research Conference Proceedings, (2020).

10.1119/perc.2020.pr.werth

289

Charging-driven coarsening and melting of a colloidal nanoparticle monolayer at an ionic liquid-vacuum interface

C. G. Bischak, J. G. Raybin, J. W. Kruppe, N. S. Ginsberg, Soft Matter, 9578-9589, (2020).

10.1039/d0sm01395a

290

Design and testing of ultrafast plasmonic lens nanoemitters

D. B. Durham, S. Rotta Loria, F. Riminucci, K. Kanellopulos, X. Shen, F. Ciabattini, A. Mostacci, P. Musumeci, A. M. Minor, S. Cabrini, D. Filippetto, Plasmonics: Design, Materials, Fabrication, Characterization, and Applications XVIII, (2020).

10.1117/12.2567540

291

Ultrafast structural dynamics of materials captured by relativistic electron bunches

K. Siddiqui, D. B. Durham, F. Cropp, A. Schmid, P. Musumeci, A. M. Minor, R. A. Kaindl, D. Filippetto, Ultrafast Nonlinear Imaging and Spectroscopy VIII, (2020).

10.1117/12.2568320

292

Potential of Attosecond Coherent Diffractive Imaging

A. Rana, J. Zhang, M. Pham, A. Yuan, Y. Lo, H. Jiang, S. J. Osher, J. Miao, Physical Review Letters, 125, 086101, (2020).

10.1103/physrevlett.125.086101

293

Engineering Mesoporous Silica Nanoparticles for Targeted Alpha Therapy against Breast Cancer

R. M. Pallares, P. Agbo, X. Liu, D. D. An, S. S. Gauny, S. E. Zeltmann, A. M. Minor, R. J. Abergel, ACS Applied Materials & Interfaces, 12, 40078-40084, (2020).

10.1021/acsami.0c11051

294

Structural basis for STAT2 suppression by flavivirus NS5

B. Wang, S. Thurmond, K. Zhou, M. T. Sánchez-Aparicio, J. Fang, J. Lu, L. Gao, W. Ren, Y. Cui, E. C. Veit, H. Hong, M. J. Evans, S. E. O’Leary, A. García-Sastre, Z. Hong Zhou, R. Hai, J. Song, Nature Structural & Molecular Biology, (2020).

10.1038/s41594-020-0472-y

295

Attosecond light science and its application for probing quantum materials

X. Shi, C. Liao, Z. Tao, E. Cating-Subramanian, M. Murnane, C. Hernández-García, H. Kapteyn, Journal of Physics B: Atomic, Molecular and Optical Physics, 53, 184008, (2020).

10.1088/1361-6455/aba2fb

296

Liquid-like Interfaces Mediate Structural Phase Transitions in Lead Halide Perovskites

C. G. Bischak, M. Lai, Z. Fan, D. Lu, P. David, D. Dong, H. Chen, A. S. Etman, T. Lei, J. Sun, M. Grünwald, D. T. Limmer, P. Yang, N. S. Ginsberg, Matter, 3, 534-545, (2020).

10.1016/j.matt.2020.07.015

297

Electron-Transparent Thermoelectric Coolers Demonstrated with Nanoparticle and Condensation Thermometry

W. A. Hubbard, M. Mecklenburg, J. J. Lodico, Y. Chen, X. Ling, R. Patil, W. ew Kessel, G. K. Flatt, H. Chan, B. Vareskic, G. Bal, B. Zutter, B. C. Regan, ACS Nano, 11510-11517, (2020).

10.1021/acsnano.0c03958

298

Atomic Structures of Anthrax Prechannel Bound with Full-Length Lethal and Edema Factors

K. Zhou, S. Liu, N. J. Hardenbrook, Y. Cui, B. A. Krantz, Z. Hong Zhou, Structure, 28, 879-887.e3, (2020).

10.1016/j.str.2020.05.009

299

Fragment-based determination of a proteinase K structure from MicroED data using ARCIMBOLDO_SHREDDER

L. S. Richards, C. Millán, J. Miao, M. W. Martynowycz, M. R. Sawaya, T. Gonen, R. J. Borges, I. Usón, J. A. Rodriguez, Acta Crystallographica Section D Structural Biology, 76, 703-712, (2020).

10.1107/s2059798320008049

300

Synchrotron infrared nano-spectroscopy and -imaging

H. A. Bechtel, S. C. Johnson, O. Khatib, E. A. Muller, M. B. Raschke, Surface Science Reports, 75, 100493, (2020).

10.1016/j.surfrep.2020.100493

STROBE Publications

2021