Publications

351

Learned reconstructions for practical mask-based lensless imaging

K. Monakhova, J. Yurtsever, G. Kuo, N. Antipa, K. Yanny, L. Waller, Optics Express, 27, 28075, (2019).

10.1364/oe.27.028075

352

Design for Hyres cathode nanotip electron source

R. M. Hessami, A. A. Amhaz, P. P. Musumeci, 2019 North American Particle Accelerator Conference, (2019).

353

Characterization of Reactive Organometallic Species via MicroED

C. G. Jones, M. Asay, L. Kim, J. F. Kleinsasser, A. Saha, T. J. Fulton, K. R. Berkley, D. Cascio, A. G. Malyutin, M. P. Conley, B. M. Stoltz, V. Lavallo, J. A. Rodríguez, H. M. Nelson, ACS Central Science, 5, 1507-1513, (2019).

10.1021/acscentsci.9b00403

354

Multimodal x-ray and electron microscopy of the Allende meteorite

Y. Lo, C. Liao, J. Zhou, A. Rana, C. S. Bevis, G. Gui, B. Enders, K. M. Cannon, Y. Yu, R. Celestre, K. Nowrouzi, D. Shapiro, H. Kapteyn, R. Falcone, C. Bennett, M. Murnane, J. Miao, Science Advances, 5, eaax3009, (2019).

10.1126/sciadv.aax3009

355

Characterizing Two-Photon Absorption With g(2)

M. D. Mazurek, A. Mikhaylov, K. Parzuchowski, D. J. Lum, L. K. Shalm, C. Drago, J. E. Sipe, S. Nam, M. T. Cicerone, C. H. Camp, R. Jimenez, T. T. Gerrits, M. J. Stevens, Frontiers in Optics + Laser Science APS/DLS, (2019).

10.1364/fio.2019.jw4a.50

356

DNA-Packing Portal and Capsid-Associated Tegument Complexes in the Tumor Herpesvirus KSHV

D. Gong, X. Dai, J. Jih, Y. Liu, G. Bi, R. Sun, Z. Hong Zhou, Cell, 178, 1329-1343.e12, (2019).

10.1016/j.cell.2019.07.035

357

A unified mechanism for intron and exon definition and back-splicing

X. Li, S. Liu, L. Zhang, A. Issaian, R. C. Hill, S. Espinosa, S. Shi, Y. Cui, K. Kappel, R. Das, K. C. Hansen, Z. Hong Zhou, R. Zhao, Nature, 573, 375-380, (2019).

10.1038/s41586-019-1523-6

358

Design for HyRES Cathode Nanotip Electron Source

R. Hessami, A. Amhaz, P. Musumeci, Proceedings of the North American Particle Accelerator Conference, USA, (2019).

10.18429/JACOW-NAPAC2019-MOPLH04

359

CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation

S. Wongpalee, S. Liu, J. Gallego-Bartolomé, A. Leitner, R. Aebersold, W. Liu, L. Yen, M. A. Nohales, P. Kuo, A. A. Vashisht, J. A. Wohlschlegel, S. Feng, S. A. Kay, Z. Hong Zhou, S. E. Jacobsen, Nature Communications, 10, 3916, (2019).

10.1038/s41467-019-11759-9

360

Progress in Time-Resolved MeV electron microscopy at UCLA

P. P. Denham, N. N. Burger, D. D. Cesar, D. D. Dang, P. P. Musumeci, 2019 North American Particle Accelerator Conference, (2019).

361

Wavefront shaping in complex media with a 350 kHz modulator via a 1D-to-2D transform

O. Tzang, E. Niv, S. Singh, S. Labouesse, G. Myatt, R. Piestun, Nature Photonics, 13, 788-793, (2019).

10.1038/s41566-019-0503-6

362

Oblique-plane single-molecule localization microscopy for tissues and small intact animals

J. Kim, M. Wojcik, Y. Wang, S. Moon, E. A. Zin, N. Marnani, Z. L. Newman, J. G. Flannery, K. Xu, X. Zhang, Nature Methods, 16, 853-857, (2019).

10.1038/s41592-019-0510-z

363

Deconstructing Black physics identity: Linking individual and social constructs using the critical physics identity framework

S. Hyater-Adams, C. Fracchiolla, T. Williams, N. Finkelstein, K. Hinko, Physical Review Physics Education Research, 15, 020115, (2019).

10.1103/physrevphyseducres.15.020115

364

Correlative conventional scanning and ptychographic soft x-ray microscopy

J. Zhao, K. Nowrouzi, R. S. Celestre, M. A. Marcus, Y. Yu, D. A. Shapiro, X-Ray Nanoimaging: Instruments and Methods IV, 11112, (2019).

10.1117/12.2531177

365

In situ structures of RNA-dependent RNA polymerase inside bluetongue virus before and after uncoating

Y. He, S. Shivakoti, K. Ding, Y. Cui, P. Roy, Z. Hong Zhou, Proceedings of the National Academy of Sciences, 116, 16535-16540, (2019).

10.1073/pnas.1905849116

366

Full-Field Stroboscopic Imaging of Acoustic and Thermal Dynamics in Isolated Nanostructures Using Tabletop EUV Coherent Imaging

B. Wang, R. Karl, G. Mancini, J. Knobloch, T. Frazer, B. Mayor, M. Tanksalvala, C. Bevis, H. Kapteyn, J. N. Hernandez-Charpak, M. Murnane, Microscopy and Microanalysis, 25, 42-43, (2019).

10.1017/s1431927619000941

367

Inducing Electrically-Active Defects in a Gallium Arsenide Nanowire with an Electron Beam

B. T. Zutter, H. Kim, W. A. Hubbard, D. Ren, J. J. Lodico, T. Chang, D. Huffaker, B. C. Regan, Microscopy and Microanalysis, 25, 1618-1619, (2019).

10.1017/s1431927619008821

368

Mapping Electronic State Changes with STEM EBIC

B. C. Regan, T. Joshi, J. J. Lodico, B. T. Zutter, H. Chan, M. Mecklenburg, D. Lederman, W. A. Hubbard, Microscopy and Microanalysis, 25, 1396-1397, (2019).

10.1017/s1431927619007712

369

Mapping Ferroelectricity in Hafnia Thin Films with STEM EBIC

H. Chan, W. A. Hubbard, J. J. Lodico, B. C. Regan, Microscopy and Microanalysis, 25, 1846-1847, (2019).

10.1017/s1431927619009966

370

Ptychographic Complex Imaging Reflectometry for Spatially-Resolved Dopant Profiling Using a Tabletop EUV Source

Y. Esashi, C. L. Porter, M. Tanksalvala, G. P. Miley, N. Horiguchi, J. L. Knobloch, J. Zhou, R. M. Karl, P. Johnsen, C. S. Bevis, B. Wang, S. L. Cousin, M. Gerrity, H. C. Kapteyn, M. M. Murnane, Microscopy and Microanalysis, 25, 116-117, (2019).

10.1017/s1431927619001314

371

Light-Assisted Diazonium Functionalization of Graphene and Spatial Heterogeneities in Reactivity

Y. Li, W. Li, M. Wojcik, B. Wang, L. Lin, M. B. Raschke, K. Xu, The Journal of Physical Chemistry Letters, 10, 4788-4793, (2019).

10.1021/acs.jpclett.9b02225

372

Secondary-Electron Electron-Beam-Induced Current Measurements at Lattice Resolution

M. Mecklenburg, W. A. Hubbard, J. J. Lodico, B. C. Regan, Microscopy and Microanalysis, 25, 1656-1657, (2019).

10.1017/s1431927619009012

373

STEM of a Single Crystal Lithium Ion Battery Anode during Electrochemical Cycling

J. J. Lodico, M. Mecklenburg, H. Chan, W. A. Hubbard, B. C. Regan, Microscopy and Microanalysis, 25, 2060-2061, (2019).

10.1017/s1431927619011036

374

Total Electron Yield Mapping of Electronic Device Features via Measurement of X-Ray Beam-Induced Currents

W. A. Hubbard, J. J. Lodico, B. Zutter, D. Shapiro, Y. Lo, A. Rana, D. Morrill, C. Gentry, H. Chan, B. C. Regan, Microscopy and Microanalysis, 25, 256-257, (2019).

10.1017/s1431927619002010

375

Machine Learning for High Throughput HRTEM Analysis

C. Groschner, C. Choi, D. Nguyen, C. Ophus, M. Scott, Microscopy and Microanalysis, 25, 150-151, (2019).

10.1017/s143192761900148x

376

Probing thermal and acoustic dynamics of inverse silicon metallatices

C. C. Bevis, B. B. Abad, J. J. Knobloch, T. T. Frazer, A. A. Adak, J. J. Hernández-Charpak, H. H. Cheng, A. A. Grede, N. N. Giebink, N. N. Nova, T. T. Mallouk, P. P. Mahale, W. W. Chen, Y. Y. Xiong, I. I. Dabo, V. V. Crespi, D. D. Talreja, H. H. Kapteyn, V. V. Gopalan, J. J. Badding, M. M. Murnane, Microscopy and Microanalysis, 25, 2174-2175, (2019).

10.1017/s1431927619011607

377

Adjusting the STEM Sample Holder Potential for Improved EBIC Contrast

M. Mecklenburg, W. A. Hubbard, H. Chan, B. C. Regan, Microscopy and Microanalysis, 25, 2354-2355, (2019).

10.1017/s1431927619012509

378

A new approach for measuring of two-photon absorption using entangled photon pair excitation

A. Mikhaylov, M. D. Mazurek, K. M. Parzuchowski, T. Gerrits, M. J. Stevens, R. Jimenez, Rochester Conference on Coherence and Quantum Optics (CQO-11), (2019).

10.1364/cqo.2019.m5a.1

379

Knife-edge based measurement of the 4D transverse phase space of electron beams with picometer-scale emittance

F. Ji, J. Navarro, P. Musumeci, D. B. Durham, A. M. Minor, D. Filippetto, Physical Review Accelerators and Beams, 15, 082801, (2019).

10.1103/physrevaccelbeams.22.082801

380

Data-driven challenges and opportunities in crystallography

C. Glynn, J. A. Rodriguez, Emerging Topics in Life Sciences, 3, 423-432, (2019).

10.1042/etls20180177

381

Speckle-structured illumination for 3D phase and fluorescence computational microscopy

L. Yeh, S. Chowdhury, N. A. Repina, L. Waller, Biomedical Optics Express, 10, 3635, (2019).

10.1364/boe.10.003635

382

Observing crystal nucleation in four dimensions using atomic electron tomography

J. Zhou, Y. Yang, Y. Yang, D. S. Kim, A. Yuan, X. Tian, C. Ophus, F. Sun, A. K. Schmid, M. Nathanson, H. Heinz, Q. An, H. Zeng, P. Ercius, J. Miao, Nature, 570, 500-503, (2019).

10.1038/s41586-019-1317-x

383

Improved Surface Functionalization and Characterization of Membrane-Targeted Semiconductor Voltage Nanosensors

J. Park, Y. Kuo, J. Li, Y. Huang, E. W. Miller, S. Weiss, The Journal of Physical Chemistry Letters, 10, 3906-3913, (2019).

10.1021/acs.jpclett.9b01258

384

Ultrasensitive Tip- and Antenna-Enhanced Infrared Nanoscopy of Protein Complexes

B. T. O’Callahan, M. Hentschel, M. B. Raschke, P. Z. El-Khoury, A. tt Lea, The Journal of Physical Chemistry C, 123, 17505-17509, (2019).

10.1021/acs.jpcc.9b05777

385

Complex Imaging Reflectometry for Dopant Profile Measurements using Tabletop High Harmonic Light

M. Tanksalvala, C. L. Porter, Y. Esashi, G. P. Miley, N. Horiguchi, R. M. Karl, P. Johnsen, C. S. Bevis, N. W. Jenkins, B. Wang, X. Zhang, S. L. Cousin, D. E. Adams, M. Gerrity, H. C. Kapteyn, M. M. Murnane, Imaging and Applied Optics 2019 (COSI, IS, MATH, pcAOP), (2019).

10.1364/cosi.2019.cw3a.6

386

Advances in in situ nanomechanical testing

A. M. Minor, G. Dehm, MRS Bulletin, 44, 438-442, (2019).

10.1557/mrs.2019.127

387

High Performance Partial Coherent X-Ray Ptychography

P. Enfedaque, H. Chang, B. Enders, D. Shapiro, S. Marchesini, Computational Science – ICCS 2019, 11536, 46 - 59, (2019).

10.1007/978-3-030-22734-0_4

388

Deep learning for single-shot autofocus microscopy

H. Pinkard, Z. Phillips, A. Babakhani, D. A. Fletcher, L. Waller, Optica, 6, 794, (2019).

10.1364/optica.6.000794

389

Direct observation of picosecond melting and disintegration of metallic nanoparticles

Y. Ihm, D. Cho, D. Sung, D. Nam, C. Jung, T. Sato, S. Kim, J. Park, S. Kim, M. Gallagher-Jones, Y. Kim, R. Xu, S. Owada, J. Shim, K. Tono, M. Yabashi, T. Ishikawa, J. Miao, D. Noh, C. Song, Nature Communications, 10, 2411, (2019).

10.1038/s41467-019-10328-4

390

Cryo-EM structures of herpes simplex virus type 1 portal vertex and packaged genome

Y. Liu, J. Jih, X. Dai, G. Bi, Z. ng Zhou, Nature, 570, 257-261, (2019).

10.1038/s41586-019-1248-6

391

Ultrafast Relativistic Electron Nanoprobes

F. F. Ji, D. B. Durham, A. M. Minor, P. P. Musumeci, J. G. Navarro, D. D. Filippetto, Communications Physics, 2, 54, (2019).

10.1038/s42005-019-0154-4

392

In situ structures of rotavirus polymerase in action and mechanism of mRNA transcription and release

K. Ding, C. C. Celma, X. Zhang, T. Chang, W. Shen, I. Atanasov, P. Roy, Z. Hong Zhou, Nature Communications, 10, 2216, (2019).

10.1038/s41467-019-10236-7

393

Elastin-Dependent Aortic Heart Valve Leaflet Curvature Changes During Cyclic Flexure

M. D. Tesfamariam, A. M. Mirza, D. Chaparro, A. Z. Ali, R. Montalvan, I. Saytashev, B. A. Gonzalez, A. Barreto, J. Ramella-Roman, J. D. Hutcheson, S. Ramaswamy, Bioengineering, 6, 39, (2019).

10.3390/bioengineering6020039

394

An Extreme Ultraviolet Spin Grating for Spatially Resolved, Hyperspectral Magnetic Dichroism Spectroscopies

N. J. Brooks, K. M. Dorney, J. L. Ellis, D. D. Hickstein, Q. L. Nguyen, C. Gentry, C. Hernández-García, D. Zusin, J. M. Shaw, G. S. Matthijs Jansen, S. Witte, H. C. Kapteyn, M. M. Murnane, Conference on Lasers and Electro-Optics, (2019).

10.1364/cleo_qels.2019.ff2c.7

395

SQUARREL: Scattering Quotient Analysis to Retrieve the Ratio of Elements in X-ray Ptychography

C. Liao, Y. Lo, J. Zhou, A. Rana, C. S. Bevis, G. Gui, B. Enders, K. Cannon, D. Shapiro, C. Bennett, H. Kapteyn, R. Falcone, J. Miao, M. Murnane, Microscopy and Microanalysis, 25, 112-113, (2019).

10.1017/s1431927619001296

396

Spectral image scanning microscopy

F. Strasser, M. Offterdinger, R. Piestun, A. Jesacher, Biomedical Optics Express, 10, 2513, (2019).

10.1364/boe.10.002513

397

Moments reconstruction and local dynamic range compression of high order superresolution optical fluctuation imaging

X. Yi, S. Son, R. Ando, A. Miyawaki, S. Weiss, Biomedical Optics Express, 10, 2430, (2019).

10.1364/boe.10.002430

398

Information-rich localization microscopy through machine learning

T. Kim, S. Moon, K. Xu, Nature Communications, 10, 1996, (2019).

10.1038/s41467-019-10036-z

399

Investigating the dynamics of ontological reasoning across contexts in quantum physics

J. R. Hoehn, J. D. Gifford, N. D. Finkelstein, Physical Review Physics Education Research, 15, 010124, (2019).

10.1103/physrevphyseducres.15.010124

400

Structure of the human ClC-1 chloride channel

K. Wang, S. Preisler, L. Zhang, Y. Cui, J. Missel, C. Grønberg, K. Gotfryd, E. Lindahl, M. Andersson, K. Calloe, P. F. Egea, D. Klaerke, M. Pusch, P. Pedersen, Z. Hong Zhou, P. Gourdon, PLOS Biology, 17, e3000218, (2019).

10.1371/journal.pbio.3000218

STROBE Publications

2019